Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01722 ATGGCGCCCCTCACTCAGAGATTTGAAAAATCCTACCACCCACCGATTTCTTTGGCGAAGAAGAGATGGCATTTCTTCAAGATAGTTCTCCCCTCTATCATTCAAGATCAAAAGCTTGGGATCCCAAGAAAGTTTGTCAGGAAACTCGGAAAGGAGATGTCTGATGTTGCAGTCCTTAAGGTTCCCAATGGTCACGTCTGGCATGTAGGATTGAGGAAAGCTGATGGCGAGGTTTGGTTCCAGAGCGGGTGGCAGGAATTTGTTGAATACCACTCTATACGAGCTGGACATTTTTTAGTTTTCAGATATGATGGGAATTCACATTTTTACGTTCTTATATTTGATATGAGTGGTAATGAGATAAACTATCTGAGGAATTCAGATAAGTTTGAAGAACCCAATCGTGATGGAGGATGTCTGGTGCCAAAAAAGAAAGAAATTAAGGATTCCGTGAAAATCTTGGGTGTCTCCCCTCCATGCCAGACTCCTGCCTCAAGCGTGGAGGTTGTTGATGGATTTGAAGACCAGACAACCAAAAGAATGGACAATCGACCAGGTTTGCAACATTCAGTTAGGTTCTCTGTTCAGTCTAGTGTGGTGAAGAGAACTACCTCAACTTGTGAAACTGAACTGAGATTTAACAAGAGGCGAAGTAGAAGATTTGCTCACTCAGACAGTCTGAGCTCTATATACGGTTCTCTTTCTAGTCGGAAAAAGAAGAGAAGTGAAGACGAGGGTAAGACTAGAGAATTAGCTAATGGAAATGAGTCAAATCGAGTTGGGCAAAACAGAAGTGAAGAATTCGCTTTTAATTTTGAGAATAAATCTGAAGCGGTTTCGATTCATTCTGATAGTCCAAGCAATGATGAACCTGCAATGTCTACTCAGCATGAGTCTTCATCCAGTAGGGCTAACAAGGACAACTGGCATCCAACAACTAAGAACACGGACAATCCACAAGCGTTAGCTACATCTGTTACACATATAGGTGCTCAGTTCGATGGGGTCAATTTTAAAAAATCTAAGACAGATGAAGTTGAATCTCATTGTTGCAATCGAGAGTCTAGAAGCAAAGACATTCAAGTACGTCAAGTGAATCGAAGAACTGAACCTGATAGACACCATGTCTCTGTAAAACAAGCAGGTGGGAGCATGAATGTCCCTAAAATACATTCGGATTCTGGGGATTTTGTGACAAAGAAGCCTGTGTCCAGGCAAGAAAAAGATAGAGCGATTCAAGCAGCCAAAGCGTTCAAATCTGAAAATCCATTCTTCATGGTTATTATGCGACGAACTTACGTGTGTGGAAAATTTAATCTGAACGTACCATTCAACTTCATCACGGCACATCTCAGAAAGGTATCTCATGATGTCACACTTGGTCTTTCGGATGGGAGAACATGGCTCGCACGGTGCCATCTATACGAAGGTATGGCTAAGATATATGCAGGTTGGAGATCATTCGTCAGGGAAAATAATCTGGGAGAAGGAGATGTATGTGTCTTCGAGGCAGTCAAGACGGAGGAGCCTGTGCTGAAAGTGTTCATTTTCCGAGTCATTGAAGATGTGACAAAACCGGTCAGACCTGCAAAGCCAAATGCCATTAGAGAACCGCTTTAA 1620 0.4241 MAPLTQRFEKSYHPPISLAKKRWHFFKIVLPSIIQDQKLGIPRKFVRKLGKEMSDVAVLKVPNGHVWHVGLRKADGEVWFQSGWQEFVEYHSIRAGHFLVFRYDGNSHFYVLIFDMSGNEINYLRNSDKFEEPNRDGGCLVPKKKEIKDSVKILGVSPPCQTPASSVEVVDGFEDQTTKRMDNRPGLQHSVRFSVQSSVVKRTTSTCETELRFNKRRSRRFAHSDSLSSIYGSLSSRKKKRSEDEGKTRELANGNESNRVGQNRSEEFAFNFENKSEAVSIHSDSPSNDEPAMSTQHESSSSRANKDNWHPTTKNTDNPQALATSVTHIGAQFDGVNFKKSKTDEVESHCCNRESRSKDIQVRQVNRRTEPDRHHVSVKQAGGSMNVPKIHSDSGDFVTKKPVSRQEKDRAIQAAKAFKSENPFFMVIMRRTYVCGKFNLNVPFNFITAHLRKVSHDVTLGLSDGRTWLARCHLYEGMAKIYAGWRSFVRENNLGEGDVCVFEAVKTEEPVLKVFIFRVIEDVTKPVRPAKPNAIREPL* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01722 539 MobiDBLite consensus disorder prediction 232 264 - -
Eupl03g01722 539 PANTHER B3 DOMAIN-CONTAINING 21 508 - -
Eupl03g01722 539 MobiDBLite consensus disorder prediction 278 319 - -
Eupl03g01722 539 Pfam B3 DNA binding domain 25 115 IPR003340 GO:0003677
Eupl03g01722 539 Pfam B3 DNA binding domain 425 518 IPR003340 GO:0003677
Eupl03g01722 539 CDD B3_DNA 23 115 IPR003340 GO:0003677
Eupl03g01722 539 SUPERFAMILY DNA-binding pseudobarrel domain 418 518 IPR015300 -
Eupl03g01722 539 MobiDBLite consensus disorder prediction 384 405 - -
Eupl03g01722 539 Gene3D - 17 118 IPR015300 -
Eupl03g01722 539 ProSiteProfiles B3 DNA-binding domain profile. 24 117 IPR003340 GO:0003677
Eupl03g01722 539 MobiDBLite consensus disorder prediction 236 252 - -
Eupl03g01722 539 Gene3D - 403 523 IPR015300 -
Eupl03g01722 539 ProSiteProfiles B3 DNA-binding domain profile. 425 520 IPR003340 GO:0003677
Eupl03g01722 539 SUPERFAMILY DNA-binding pseudobarrel domain 21 117 IPR015300 -
Eupl03g01722 539 SMART B3_2 25 117 IPR003340 GO:0003677
Eupl03g01722 539 SMART B3_2 425 520 IPR003340 GO:0003677
Eupl03g01722 539 CDD B3_DNA 423 518 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01722 Eupl-Chr3 45025691 45030269 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01722 400 519 B3 DNA Binding Superfamily AT3G18990 43.333 2.22e-24 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Eupl03g01722 B3 6.7e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01722 - - nnu:104606751 282.337