Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01719 ATGAGGCTGTTCAAACCCTCAAAACCCTCGACTAACAGAGCTAACATCGGCGTTTCAACAATGCGTCGACACCGGAAACTCGAAGACTGCTGTCATTTCTTCAAGATAATCCACGCTTCTATCATTCAAGATCAACGGCTCGGGATCCCAAGAAAGTTTGTTAGGAAGTTTGGAGAGGAACTGTCTGATTTTGCAGCGCTCAAGGTTCCCAGTGGTTCAGTCTGGCATGTAGAATTGTGTAAAGCCAAAGGTGAGGTTTGGTTCAAGAGTGGTTGGCAGGAATTCATAGAATATCACTCTATATGTGTTGGGCATTTCTTAGTTTTCAGATATGATGGGAATTCGCAGTTTTATGTTCTTATATTCGATATGAGTGCTTCTGAGATAGAGTATCCATTTGATATCGAGGATTTTGAGGAGCCCAAGCATGAAAGAGGATGTTCGGCGCCTGAAAAAGAAGAAGAAGACAACTCTCTGGAAATCTTGGATGTTTCTCCTCCATGCCAGACTCCATCTGTGTCGACAAAGGAGGTCATTGATGAATGTGAGGACGAGCATGAAAGAAGATGTTTGGCGCCTGAAAAAGAAGAAACTCAAGAAGACAACTCTGTGGAAATCTTGGATGTTTCTCCTCGATGCCAGACTCCATCTGTGTCGACAAAGGAGGTCATTGATGAATGTGAAGACCAACAGACAACGATAAAAAATGACACTACTTCTTTGTCCCGAATTCGCACCTCTCTTCGGTCCAATGTTGTGAAGGGAATTGAGTCAACTTGTGATTCTGAGTCGAGACTGTACAAATGGAGTAAAAGTAGCGTTCCTTTCTCGGAGAGCCCAAGGTTTTTTGCTAGAAATGAAAAGAAGTGTAATGAAGATGGTGGAAAGAAAAGAGAAACAGCTGATGGAAATGAATCAAATCAAGTTGAACAGAGCAGATGTGAAGAATTCACTTTCAATTTTGAGAACAGAACTGAAGTGATTTTGATTCATTCTGATAGTTCAAGCAATGATGAACCTAAAATTTCTGCCTCACGTAAGTCCTCATCAATTAGGGCCAACAAAGACGAACTGAATCCAACCGAGAACATGGGAAAACTTAAAATGTCCAGGACAGATGGTGTCGAATCGCATTGTCTCAAGCGTGGATCTGGAACTGAAGAATTTTCAATCCGTCGAGTAAATCAAAGAGCTGAACCAGATTTACTTGATTTCTACATTCCCATTTCTACAAGAAGGCCGCATCCTCATTCTACGACTAGGAGGCGTGTGACAACCCAAGAAAAAGAAAGAGCTATTAAAGCAGCCAGAGCATTTAAGTCCGAAAATCCTTTCTTCATGGTTATTATGCGACCATCCCATGTGGATGGGAATTTTGTTTTGAATGTACCATTTGCCTTTGCCAAGAGCTATCTGAAAGAGGAACTTCAGAGTGTCATTCTTCGTGTTTCAGACAGGCGAACGTGGCATGTTTACTGTGTTTTTGGAGATAGTTATGTTAAGCTATTCAAGGGTTGGGAGCTATTTGCTTCAGATAATTATTTGGAAGAAGGTGATGTCTGCATCTTCGAGCTAGTTAGGAGCGGTCATATCGAGCTGAATGTTGTCATTTTCCGAGTTCGTGAAGATGTGACGCTGCATTCAAGTAGAGATGTTCATATATTAGAGTAA 1671 0.4159 MRLFKPSKPSTNRANIGVSTMRRHRKLEDCCHFFKIIHASIIQDQRLGIPRKFVRKFGEELSDFAALKVPSGSVWHVELCKAKGEVWFKSGWQEFIEYHSICVGHFLVFRYDGNSQFYVLIFDMSASEIEYPFDIEDFEEPKHERGCSAPEKEEEDNSLEILDVSPPCQTPSVSTKEVIDECEDEHERRCLAPEKEETQEDNSVEILDVSPRCQTPSVSTKEVIDECEDQQTTIKNDTTSLSRIRTSLRSNVVKGIESTCDSESRLYKWSKSSVPFSESPRFFARNEKKCNEDGGKKRETADGNESNQVEQSRCEEFTFNFENRTEVILIHSDSSSNDEPKISASRKSSSIRANKDELNPTENMGKLKMSRTDGVESHCLKRGSGTEEFSIRRVNQRAEPDLLDFYIPISTRRPHPHSTTRRRVTTQEKERAIKAARAFKSENPFFMVIMRPSHVDGNFVLNVPFAFAKSYLKEELQSVILRVSDRRTWHVYCVFGDSYVKLFKGWELFASDNYLEEGDVCIFELVRSGHIELNVVIFRVREDVTLHSSRDVHILE* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01719 556 MobiDBLite consensus disorder prediction 290 311 - -
Eupl03g01719 556 Gene3D - 423 544 IPR015300 -
Eupl03g01719 556 MobiDBLite consensus disorder prediction 290 304 - -
Eupl03g01719 556 SUPERFAMILY DNA-binding pseudobarrel domain 439 539 IPR015300 -
Eupl03g01719 556 Pfam B3 DNA binding domain 33 123 IPR003340 GO:0003677
Eupl03g01719 556 Pfam B3 DNA binding domain 446 540 IPR003340 GO:0003677
Eupl03g01719 556 ProSiteProfiles B3 DNA-binding domain profile. 32 125 IPR003340 GO:0003677
Eupl03g01719 556 CDD B3_DNA 32 123 IPR003340 GO:0003677
Eupl03g01719 556 PANTHER B3 DOMAIN-CONTAINING 28 528 - -
Eupl03g01719 556 MobiDBLite consensus disorder prediction 332 365 - -
Eupl03g01719 556 ProSiteProfiles B3 DNA-binding domain profile. 446 541 IPR003340 GO:0003677
Eupl03g01719 556 CDD B3_DNA 444 539 IPR003340 GO:0003677
Eupl03g01719 556 Gene3D - 27 126 IPR015300 -
Eupl03g01719 556 MobiDBLite consensus disorder prediction 332 357 - -
Eupl03g01719 556 SMART B3_2 33 125 IPR003340 GO:0003677
Eupl03g01719 556 SMART B3_2 446 541 IPR003340 GO:0003677
Eupl03g01719 556 SUPERFAMILY DNA-binding pseudobarrel domain 30 125 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01719 Eupl-Chr3 45012370 45017998 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01719 418 542 B3 DNA Binding Superfamily AT3G18990 38.400 7.51e-23 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Eupl03g01719 B3 2.3e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01719 - - tss:122660501 246.128