Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01718 ATGGGTAAGAAGCCAAAGAAGTCTAGAAGCAACAGGCCTTCCTTCTTCAAGGTCTTGATCGGTGATTTTTCTAAGAAACTGCGGGTACCACCAGCTTTTATCGAGCACTTCAATGGGATCTTACCCTGCAAATGCATCCTTAGAAGTCCCACTGGAAGATCTTGGATTGTAAAGGTGAAAAGGGTTGGCAACGATTTGTTTTTCCATAATGGTTGGCAGGCATTTGTGAATTGTCATTCTTTAGAATTCGGGGATTTCTTAGTTTTCAGATACAATGGTAATTCAAAATTTAATGTTAAAATATATGGAAGAAATGCCTGCGAGAAGGATGTACCTTTGGCTAAGAATGACAATGATGAACCCATTTCCTACGTAGAGAAAGAAAAACAAGGTAAAGCAATGGCAAAATTCGTCAGGTACTCTTTTCAGCTTAAACATCAGAAAAGAATCAGGAAGGAGAAAGCAGATCTTCGTGGCAAATCTTGTGGATATGTTAAGCCAAAAAGGGTACCTGCTATTGAGACTGAAGCACTTGAAGAAGCTCGTTCTTTCAAAACGGAGCGTCCCCATTTCATTGCAATCTGGAGGCATTCTAGAAGATCTCATATGACGGTTCCAAGGGCTCTGGCGATAGAGAATGGCCTCAGAACCAGGAAGAGTACAGTGCTCCGGGATCCTCATAGGAGGTCATGGACCGTGAGCATCACTATCAGGAAAGATAGACGCATCGATCTGACTGAAGGGTGGGCTGGATTTTGGGAAGCAAATAGCCTAGAACTGGGTGATGCCTGCCTTTTTGAGTTCATCCGAAGGATCGGTGATGTAATACGTGTTCACATCTTCCGGGTAGCAAAGTTAGAGAATCCTTTAGATAAGTGCACACCTGTGAAAAATGGACCAATCATGGACATTCCTGTCTCTAAAAGAAGCCTGCATTATAAGGAATCTACGAGTAGTAGGCGTGTGACAACCCAAGAACAAGAAAGAGCAACTAAAGTACTCAGAGCATTTAAGTCCAAAAATCCTTTCTTCATGGTTATTATGCGACCATCCTATTTGTATGGGAAAAATTTTTTGAATGTACCATTTCAATTTGCCAAGAGCTATCTGAAAGAGCAACTTCATAGTGTCACTCTTCGCGTTTCAGACAGGAGAACGTGGCATGTTCACTGTGTTTTCGGACATTATCATCGTTTTAAGCTACTCAAGGGTTGGGATGCATTTGTGTCAGATAATTATTTGGAAGTAGGTGATGTCTGCATCTTCGAGCTGGTTAGGAGGAGTCGGATCGAGCTGAAAGTTTTCATCTTCCGAGCCCGTGAAGATCCGACCCTGCTTCCCAGTGGAGATACTCATATATTAGAGTAA 1368 0.4225 MGKKPKKSRSNRPSFFKVLIGDFSKKLRVPPAFIEHFNGILPCKCILRSPTGRSWIVKVKRVGNDLFFHNGWQAFVNCHSLEFGDFLVFRYNGNSKFNVKIYGRNACEKDVPLAKNDNDEPISYVEKEKQGKAMAKFVRYSFQLKHQKRIRKEKADLRGKSCGYVKPKRVPAIETEALEEARSFKTERPHFIAIWRHSRRSHMTVPRALAIENGLRTRKSTVLRDPHRRSWTVSITIRKDRRIDLTEGWAGFWEANSLELGDACLFEFIRRIGDVIRVHIFRVAKLENPLDKCTPVKNGPIMDIPVSKRSLHYKESTSSRRVTTQEQERATKVLRAFKSKNPFFMVIMRPSYLYGKNFLNVPFQFAKSYLKEQLHSVTLRVSDRRTWHVHCVFGHYHRFKLLKGWDAFVSDNYLEVGDVCIFELVRRSRIELKVFIFRAREDPTLLPSGDTHILE* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01718 455 CDD B3_DNA 13 102 IPR003340 GO:0003677
Eupl03g01718 455 SMART B3_2 191 284 IPR003340 GO:0003677
Eupl03g01718 455 SMART B3_2 344 440 IPR003340 GO:0003677
Eupl03g01718 455 SMART B3_2 15 105 IPR003340 GO:0003677
Eupl03g01718 455 CDD B3_DNA 342 438 IPR003340 GO:0003677
Eupl03g01718 455 SUPERFAMILY DNA-binding pseudobarrel domain 9 107 IPR015300 -
Eupl03g01718 455 Gene3D - 321 442 IPR015300 -
Eupl03g01718 455 Gene3D - 172 285 IPR015300 -
Eupl03g01718 455 ProSiteProfiles B3 DNA-binding domain profile. 188 284 IPR003340 GO:0003677
Eupl03g01718 455 ProSiteProfiles B3 DNA-binding domain profile. 344 440 IPR003340 GO:0003677
Eupl03g01718 455 SUPERFAMILY DNA-binding pseudobarrel domain 184 282 IPR015300 -
Eupl03g01718 455 Gene3D - 6 107 IPR015300 -
Eupl03g01718 455 ProSiteProfiles B3 DNA-binding domain profile. 12 105 IPR003340 GO:0003677
Eupl03g01718 455 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 22 286 IPR044837 -
Eupl03g01718 455 Pfam B3 DNA binding domain 199 282 IPR003340 GO:0003677
Eupl03g01718 455 Pfam B3 DNA binding domain 344 439 IPR003340 GO:0003677
Eupl03g01718 455 Pfam B3 DNA binding domain 15 103 IPR003340 GO:0003677
Eupl03g01718 455 CDD B3_DNA 189 282 IPR003340 GO:0003677
Eupl03g01718 455 SUPERFAMILY DNA-binding pseudobarrel domain 339 441 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01718 Eupl-Chr3 45003981 45007637 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01718 15 269 B3 DNA Binding Superfamily AT5G66980 27.365 6.00e-28 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Eupl03g01718 B3 9.1e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01718 - - psom:113294498 256.914