Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01717 ATGATGCAATTTCTAAACCAAAACAGCAAAATGGGTAGAAAACCAGAGTGTAGAAGCAACAGACCTTCCTTCTTCAAGGTCTTAATTGGTGACTTTTCTAAGAATCTGCGGATACCGCCAGCATTTATGAAGCACTTCAATGGCGATTTTCCCTGCAAATCCATTCTAAGAAGCTCTACTGGGAGATCTTGGATTGTAAAAATGAAAAAGGTTGATGACAGCAACTTGTTTTTCCATAATGGATGGCGGGACTTTGTGAAAGATTATTCTTTAGAATTCGGAGATTTTCTAGTGTTCAGATACAACGGGAATTCAAGATTTAATGTTAAAATATATGGGAGAAGTGGCTGTGAAAAGGAGATAGTTCCAGGGATTCTGAAGGAAGGTAATGCAATGGTAAAATTCAGCAAGGACCATGAAGGAAGCTGGAAAGAGAAAGCAGTTGTAGTATCGGAGAAGATGATGACTTTTCTTGGTTATATAGGTGGTGGATCTGTAACGCCAAAGAGGAGAGCTATTATCAAATCAGAGCGTCGGTGTTTCACTGCGACTTGTAGGATGTCAAGAAGATATTACATGACAGTTCCGAAGGGGCTGGCAAAAGAGACTGGGCTTGTAAAGAAGGCAAGCACGGTGCTTCGGGATCCTTGTGGTAGGTCGTGGCCCGTGAAAATCGTGATCAGGGGAGATGGGCGTGTTGATCTGGCAAGAGGATGGGGTGAATTTTGGGAAGCGAACAGCTTAGTAGAAGGTGACGCTTGCCATTTTGAGTTTACCCAAGGAATAGGCAACGCGTTATGTGTTGACATCTTCCGAGCAGGAGTCGGACAACCCATTAGACCATGCAACTGCAGCTGTGTGAAATTGTTAAAGAAGTAA 879 0.4289 MMQFLNQNSKMGRKPECRSNRPSFFKVLIGDFSKNLRIPPAFMKHFNGDFPCKSILRSSTGRSWIVKMKKVDDSNLFFHNGWRDFVKDYSLEFGDFLVFRYNGNSRFNVKIYGRSGCEKEIVPGILKEGNAMVKFSKDHEGSWKEKAVVVSEKMMTFLGYIGGGSVTPKRRAIIKSERRCFTATCRMSRRYYMTVPKGLAKETGLVKKASTVLRDPCGRSWPVKIVIRGDGRVDLARGWGEFWEANSLVEGDACHFEFTQGIGNALCVDIFRAGVGQPIRPCNCSCVKLLKK* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01717 292 ProSiteProfiles B3 DNA-binding domain profile. 178 274 IPR003340 GO:0003677
Eupl03g01717 292 SUPERFAMILY DNA-binding pseudobarrel domain 19 117 IPR015300 -
Eupl03g01717 292 Gene3D - 16 117 IPR015300 -
Eupl03g01717 292 CDD B3_DNA 22 112 IPR003340 GO:0003677
Eupl03g01717 292 CDD B3_DNA 187 272 IPR003340 GO:0003677
Eupl03g01717 292 PANTHER B3 DOMAIN-CONTAINING 186 272 - -
Eupl03g01717 292 Gene3D - 166 274 IPR015300 -
Eupl03g01717 292 ProSiteProfiles B3 DNA-binding domain profile. 21 115 IPR003340 GO:0003677
Eupl03g01717 292 SUPERFAMILY DNA-binding pseudobarrel domain 174 272 IPR015300 -
Eupl03g01717 292 SMART B3_2 24 115 IPR003340 GO:0003677
Eupl03g01717 292 SMART B3_2 181 274 IPR003340 GO:0003677
Eupl03g01717 292 Pfam B3 DNA binding domain 24 113 IPR003340 GO:0003677
Eupl03g01717 292 Pfam B3 DNA binding domain 188 273 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01717 Eupl-Chr3 44997544 44999667 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01717 23 121 B3 DNA Binding Superfamily AT5G66980 44.660 8.02e-22 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Eupl03g01717 B3 2.4e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01717 - - nnu:104589321 229.565