Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Eupl03g01713 | ATGGAGAATCGTTGGGGAAGGAAGCTACACTTCTTTAAGGTTCTAATTGGAGATTTCCAGAAGAGGCTGCGGATCCCGCAGGCCTTTGTCAAGCATATTTCGGAAGAGTCATCTGAAAGAGCAATTTTAGAGGGTCCGAGTGGTAGTCATTGGCATGTCAAATTAAAAAGAACTACCAATGACATGTATCTACAGGATGGTTGGGAGAAATTTTCCAGAGACCACTCCTTAAGGGGAGGTGAATTTTTAGTCTTCAGTTATGATGGTAATATGCATTTCAGTGTAAAAATATTTGCTACAAGTGCATGTGAGAGAGAGGACGCTTTTGCTGTCAAAGCTTCTAAAGAATCGGTCAATCGTCAAGGAAGAAAGAGATGTGGCACGCCAGTTAAGGTCTTCAAAAGAAATAAACGTGGTAAACCATGGAAGAATTCTCTGGATCCCAGCCACGTCTTTCAGTGTTCAGAGAAGCATACGACGGGATGCATGCTTGAACAACAATGTCCACATCAGTATGACCGATCGGATTCACCTCGAGGCCAAATGGCATCATTGTCAAATCCATTTAGACTCATAACTGTGGAAAGAAATGCAAGGAAAGCGGCCTACTCTTTTTCCTCTTCTTTTCCTTTTTTTGTAACTGAAATGAAAGCGTCCAATTTGGGCATCCCATTTAATTTGTATATACCAGCTTGCTTTGCTAGGGCACATCTTCCAAGAGCATCAACAAAAATGATCCTGCGGAATCAAGAAGGGAACACATGGACAGTGAGTTTATATGCCGGTTCGAATCAGAACTGTGTTTGTGGAGGGTGGAATGCATTTGCACGTGATAATCATCTCAAAAAAGGAGATTACTGTGTATTCGAGCTTGTAGATGAAGTTGACATGCAGGTACATATTTTTCGGGTTGGTTGTCTCAAGTCATGTTGA | 933 | 0.418 | MENRWGRKLHFFKVLIGDFQKRLRIPQAFVKHISEESSERAILEGPSGSHWHVKLKRTTNDMYLQDGWEKFSRDHSLRGGEFLVFSYDGNMHFSVKIFATSACEREDAFAVKASKESVNRQGRKRCGTPVKVFKRNKRGKPWKNSLDPSHVFQCSEKHTTGCMLEQQCPHQYDRSDSPRGQMASLSNPFRLITVERNARKAAYSFSSSFPFFVTEMKASNLGIPFNLYIPACFARAHLPRASTKMILRNQEGNTWTVSLYAGSNQNCVCGGWNAFARDNHLKKGDYCVFELVDEVDMQVHIFRVGCLKSC* | 311 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Eupl03g01713 | 310 | SUPERFAMILY | DNA-binding pseudobarrel domain | 205 | 305 | IPR015300 | - | |
| Eupl03g01713 | 310 | Gene3D | - | 193 | 305 | IPR015300 | - | |
| Eupl03g01713 | 310 | SUPERFAMILY | DNA-binding pseudobarrel domain | 8 | 105 | IPR015300 | - | |
| Eupl03g01713 | 310 | Gene3D | - | 5 | 103 | IPR015300 | - | |
| Eupl03g01713 | 310 | ProSiteProfiles | B3 DNA-binding domain profile. | 8 | 101 | IPR003340 | GO:0003677 | |
| Eupl03g01713 | 310 | CDD | B3_DNA | 213 | 303 | IPR003340 | GO:0003677 | |
| Eupl03g01713 | 310 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED | 17 | 306 | IPR044837 | - | |
| Eupl03g01713 | 310 | SMART | B3_2 | 212 | 305 | IPR003340 | GO:0003677 | |
| Eupl03g01713 | 310 | SMART | B3_2 | 11 | 101 | IPR003340 | GO:0003677 | |
| Eupl03g01713 | 310 | Pfam | B3 DNA binding domain | 11 | 99 | IPR003340 | GO:0003677 | |
| Eupl03g01713 | 310 | Pfam | B3 DNA binding domain | 212 | 303 | IPR003340 | GO:0003677 | |
| Eupl03g01713 | 310 | CDD | B3_DNA | 10 | 98 | IPR003340 | GO:0003677 | |
| Eupl03g01713 | 310 | ProSiteProfiles | B3 DNA-binding domain profile. | 212 | 305 | IPR003340 | GO:0003677 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Eupl03g01713 | Eupl-Chr3 | 44964297 | 44971934 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Eupl03g01713 | 20 | 307 | B3 DNA Binding Superfamily | AT3G18990 | 27.914 | 8.29e-25 | 100 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | B3 | Eupl03g01713 | B3 | 7.3e-19 | CL0405 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Eupl03g01713 | - | - | nnu:104610773 | 245.358 |