Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01712 ATGGAGAAGCGATGCCAGAATCTTTCCGCTAGGAAGCCTTACTTCTTTAAAGTTCTAATGGGGGATTTCAAGCGGAGGCTGCGGATCCCACGGGCCTTTGTCAATCATATCTCTGAAGACTCGTCTGAAAGAGCAATTTTAGAGGGGCCCAGCGGTAGTCATTGGCATGCCAAATTAAAAAGAACTACCAATGACATGTATCTAGAGGATGGGTGGGAAATATTTTCAAGAGACCACTCCTTAAGGGGAGGTGAATTTGTAGTCTTCAAATATGATGGTAATATGCATTTCAGTGTAAAAATCTTCGCTACAAGTGCATGTGAGCGAGAGGATGCTTTTACGGTTAAATCTTCTCAAAAATCAGTCGAATCCCAAGGGAAAAAGAGATCTGGTAATCCACTGAAGGGTTTTGAAAGAAAGAAAAGTGGTAGACCATGGAAGAGTTCTCTGGATCCCAGGCGCCTCTCTCATTCAGAGAAGCATCAGAAAGACTGCATGCAGGAACAACAACATCCATATCCGCATGGTCAGTCGGATTCACTTCAAGGACGAAGAGCATCATTGCCACAACCAGATAGGCTTACGATAACTGCAGAAACAAAAGCAAGGGAAGCATTGGTCTCTTTTACCTCTCCTTTTCCTTATTTCGTAACTGACATGAAAGTGACGAATGTGAGCAACCCATTTAAGTTGACAATACCAGTTTGCTTTTCAAGGGCCTATCTTCCAAGAACATCCACAAATATGGTCCTGCGAAATTCCAAAGGGGACGTATGGATGGTGAACTTCCATATTGGTACAAGGCAGTACTTCTTTTCTGGAGGGTGGGCTCCCTTTTCACGTGATAACAGTCTTAGGAAAGGAGATTACTGTATATTCGAGCTTGTGGATGAACTTGACATGCAGGTACATATTTTTCAAGTTGGTTGTCTGAAGGTGTCTTGCTCTGTTGGTCGAACGCATAAATCTCTCACTGGAAAGGGTCAGCATTTCTATGGGAGAAGACGAGCTGTTTCTTTGGAAGCAGAGGGAACTCTATCATAG 1044 0.4339 MEKRCQNLSARKPYFFKVLMGDFKRRLRIPRAFVNHISEDSSERAILEGPSGSHWHAKLKRTTNDMYLEDGWEIFSRDHSLRGGEFVVFKYDGNMHFSVKIFATSACEREDAFTVKSSQKSVESQGKKRSGNPLKGFERKKSGRPWKSSLDPRRLSHSEKHQKDCMQEQQHPYPHGQSDSLQGRRASLPQPDRLTITAETKAREALVSFTSPFPYFVTDMKVTNVSNPFKLTIPVCFSRAYLPRTSTNMVLRNSKGDVWMVNFHIGTRQYFFSGGWAPFSRDNSLRKGDYCIFELVDELDMQVHIFQVGCLKVSCSVGRTHKSLTGKGQHFYGRRRAVSLEAEGTLS* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01712 347 CDD B3_DNA 13 102 IPR003340 GO:0003677
Eupl03g01712 347 SUPERFAMILY DNA-binding pseudobarrel domain 209 308 IPR015300 -
Eupl03g01712 347 Gene3D - 7 107 IPR015300 -
Eupl03g01712 347 MobiDBLite consensus disorder prediction 113 190 - -
Eupl03g01712 347 Pfam B3 DNA binding domain 216 307 IPR003340 GO:0003677
Eupl03g01712 347 Pfam B3 DNA binding domain 15 103 IPR003340 GO:0003677
Eupl03g01712 347 CDD B3_DNA 214 306 IPR003340 GO:0003677
Eupl03g01712 347 ProSiteProfiles B3 DNA-binding domain profile. 216 309 IPR003340 GO:0003677
Eupl03g01712 347 Gene3D - 194 309 IPR015300 -
Eupl03g01712 347 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 20 309 IPR044837 -
Eupl03g01712 347 MobiDBLite consensus disorder prediction 132 168 - -
Eupl03g01712 347 ProSiteProfiles B3 DNA-binding domain profile. 12 105 IPR003340 GO:0003677
Eupl03g01712 347 SMART B3_2 15 105 IPR003340 GO:0003677
Eupl03g01712 347 SMART B3_2 216 309 IPR003340 GO:0003677
Eupl03g01712 347 MobiDBLite consensus disorder prediction 171 185 - -
Eupl03g01712 347 SUPERFAMILY DNA-binding pseudobarrel domain 11 109 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01712 Eupl-Chr3 44956577 44962501 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01712 12 311 B3 DNA Binding Superfamily AT3G18990 23.615 3.56e-21 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Eupl03g01712 B3 1.5e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01712 - - nnu:104610773 253.832