Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01702 ATGGCGATCAGAATCACGGTCACCTATTCCGGCTATCTTGCTCAGAACCTCGCCTCATCGGCCGGAATTAGGTCAGGAAATTTCCGTTTGTTTCATGAGTGCTGCGGACGATCGCAGGCTCTCTTCCCCAGCCAGAAATCTGAAGTCGATCCAGCCGCGAGGAGTGATCATGCTGATTTCACCAGATACAAGGCGAGAAGTTGGTCGAAGACACCGGTGTCGGCTTATAGTTCGATTGCAGGCGATCTTCGCTCAGTGAATTGTCAATCTCCTTTAATTGTGGGTTTGATTTCAATGATTAAGTCATCGGCGTATGCTTCGGGATCTACCGGTATGGGGATTTTTGGGAACACGTCTTTGTCGGTGCTCGGATTTAATGCGTCTTGGTTCCTTCCATTTTTTCAAGGATCGAGATGGCTCCCCTGTAATGAGTTTTTCCAGGGTTCTGTGAGCAATGACGTTGATAAAGGTGGTACAAACCCTGGTGATAGTGAAGTTAGGGAAATCTCCACGAAAGTCTCGAAAGGTTTAAATGGAAAATCGGTTGAAAAGAATAGCTGGCTTTCAAGATGTGTGAATTTATGCTCGGATGATGCAAAGGCTGTTCTTACAGCATTGACTGTCTCCTTGCTGTTCCGGTCTTTCTTGGCAGAGCCGAGATCAATTCCATCGCTCTCTATGTATCCAACGCTCGATGTGGGGGACAGGATATTAGCAGAGAAGGTTTCGTATTTTTTCAGAAAGCCTGATGTTGCAGATATAGTGATCTTTAAGGCTCCGCCAATCCTGCAGGAACATGGTTTTAGTTCTGGCGATGTGTTTATCAAAAGAATTGTAGCCAAGGCAGGAGACTATGTTGAAGTTTGCAATGGCAAATTGTTGGTGAATGGTATCTTCCAAGCCGATGATTTCATTTTAGAGTCACTTGCATATGAAATGGATCCAGTGCTTGTTCCTGAAGGCTATGTGTTTGTGATGGGGGACAATCGCAACAACAGCTTTGACTCCCATAATTGGGGTCCACTTCCTATAGAAAACATTGTTGGCCGATCGGTGCTTCGTTACTGGCCTCCTACAAAAATATCTGATACTATTTATGAACCACAGGGAGGGCAGAATGTTGTGGCAGTTTCTTGA 1137 0.4538 MAIRITVTYSGYLAQNLASSAGIRSGNFRLFHECCGRSQALFPSQKSEVDPAARSDHADFTRYKARSWSKTPVSAYSSIAGDLRSVNCQSPLIVGLISMIKSSAYASGSTGMGIFGNTSLSVLGFNASWFLPFFQGSRWLPCNEFFQGSVSNDVDKGGTNPGDSEVREISTKVSKGLNGKSVEKNSWLSRCVNLCSDDAKAVLTALTVSLLFRSFLAEPRSIPSLSMYPTLDVGDRILAEKVSYFFRKPDVADIVIFKAPPILQEHGFSSGDVFIKRIVAKAGDYVEVCNGKLLVNGIFQADDFILESLAYEMDPVLVPEGYVFVMGDNRNNSFDSHNWGPLPIENIVGRSVLRYWPPTKISDTIYEPQGGQNVVAVS* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01702 378 SUPERFAMILY LexA/Signal peptidase 213 362 IPR036286 -
Eupl03g01702 378 CDD S26_SPase_I 218 350 IPR019533 GO:0004252|GO:0006465
Eupl03g01702 378 PRINTS Bacterial leader peptidase 1 (S26A) family signature 274 286 IPR000223 GO:0006508|GO:0008236|GO:0016020
Eupl03g01702 378 PRINTS Bacterial leader peptidase 1 (S26A) family signature 318 337 IPR000223 GO:0006508|GO:0008236|GO:0016020
Eupl03g01702 378 PRINTS Bacterial leader peptidase 1 (S26A) family signature 215 231 IPR000223 GO:0006508|GO:0008236|GO:0016020
Eupl03g01702 378 PANTHER SIGNAL PEPTIDASE I 169 363 IPR000223 GO:0006508|GO:0008236|GO:0016020
Eupl03g01702 378 ProSitePatterns Signal peptidases I signature 3. 323 336 IPR019758 GO:0004252|GO:0016020
Eupl03g01702 378 Pfam Signal peptidase, peptidase S26 199 356 IPR019533 GO:0004252|GO:0006465
Eupl03g01702 378 Gene3D Umud Fragment, subunit A 212 368 - -
Eupl03g01702 378 ProSitePatterns Signal peptidases I serine active site. 224 231 IPR019756 GO:0004252|GO:0016020
Eupl03g01702 378 NCBIfam signal peptidase I 201 357 IPR000223 GO:0006508|GO:0008236|GO:0016020
Eupl03g01702 378 FunFam Peptidase/ serine-type peptidase 224 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01702 Eupl-Chr3 44809379 44814152 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01702 227 357 MADS-box Gene Family AT1G29960 33.083 8.64e-14 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01702 K03100 - nnu:104595855 544.273