Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01623 ATGCCCGAAACCAACCCTCAAGCTCTTCAAACTCGTCGAGACCAGCAATCGTACGGCCATGATAACAGTTCCATGAACAACCTTCCAAGCCAGATCGAAGTAGACGACGACGGTGCAGATCCTCACATCCGCTTCGAAGCTCAAGCACCTGAAGACGGTGGCCCTGGTGCCGGTATCGAAGCGATGGACGGTGTTGAAGACGTCCCTTCGGATTCTGCTGCTTACGTTGCTGGTGTCAATCACACTTTGGTGGCGCGGGGCAGCGAGAACATGGATCAACTCACTCTCTCGTTTCAGGGTGAGGTCTATGTTTTCGACTCCGTCTCGCCGGAAAAGGTGCAGGCAGTGCTGTTGCTGCTGGGAGGATACGAAATACCTTCTGCAGTGCCTAGCGTGGCATTAAGCTCTCAGAATCATAGGGGTTCAAGTGATTTACCGCGACGCTCAAGTCTTCCACAGAGAGCTGTCTCTTTGAGTAGGTTCCGTGAAAAACGAAAAGAACGAAACTATGATAAGAAAATTAGATATAATGTCCGTAAAGAAGTTGCGCTCAGGATGCAACGTAAAAAGGGTCAGTTTGCGTCGTCTAAGGTTGTGGATCCGGCATCAGCTTCTTCAAGCTGGAATGGTACAGAAAATTCAGGACAAGATGATCCCCAGCCAGAAACACTATGTACACATTGTGGCACTAGCTCAAAGGCCACTCCAATGATGCGTCGTGGGCCTGCTGGCCCAAGGACTCTATGTAATGCATGTGGGCTTATGTGGGCAAACAAGGGAACTTTAAGACATGTTTCCAGGGCTTTAACTTTGGTAGCCCATCATCCATCTGTGCACCTAACTGAACAGGGCGAAGCTAATGAGACTGATATCGGAAACAACGAGGCACCCACAGGTGCCCCTTCCTCCAATGGCGATAATGATAACTCAGCTGTAACGGCTGAACAGTAA 951 0.4984 MPETNPQALQTRRDQQSYGHDNSSMNNLPSQIEVDDDGADPHIRFEAQAPEDGGPGAGIEAMDGVEDVPSDSAAYVAGVNHTLVARGSENMDQLTLSFQGEVYVFDSVSPEKVQAVLLLLGGYEIPSAVPSVALSSQNHRGSSDLPRRSSLPQRAVSLSRFREKRKERNYDKKIRYNVRKEVALRMQRKKGQFASSKVVDPASASSSWNGTENSGQDDPQPETLCTHCGTSSKATPMMRRGPAGPRTLCNACGLMWANKGTLRHVSRALTLVAHHPSVHLTEQGEANETDIGNNEAPTGAPSSNGDNDNSAVTAEQ* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01623 316 MobiDBLite consensus disorder prediction 135 162 - -
Eupl03g01623 316 SMART GATA_3 219 273 IPR000679 GO:0006355|GO:0043565
Eupl03g01623 316 Pfam CCT motif 154 196 IPR010402 GO:0005515
Eupl03g01623 316 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 276 - -
Eupl03g01623 316 MobiDBLite consensus disorder prediction 282 316 - -
Eupl03g01623 316 MobiDBLite consensus disorder prediction 193 241 - -
Eupl03g01623 316 Pfam GATA zinc finger 225 261 IPR000679 GO:0006355|GO:0043565
Eupl03g01623 316 ProSitePatterns GATA-type zinc finger domain. 225 252 IPR000679 GO:0006355|GO:0043565
Eupl03g01623 316 SMART tify_2 87 122 IPR010399 -
Eupl03g01623 316 ProSiteProfiles CCT domain profile. 154 196 IPR010402 GO:0005515
Eupl03g01623 316 PANTHER GATA TRANSCRIPTION FACTOR 28 24 312 IPR045280 GO:0006355
Eupl03g01623 316 MobiDBLite consensus disorder prediction 1 31 - -
Eupl03g01623 316 Gene3D - 216 272 IPR013088 GO:0006355|GO:0008270
Eupl03g01623 316 ProSiteProfiles GATA-type zinc finger domain profile. 219 275 IPR000679 GO:0006355|GO:0043565
Eupl03g01623 316 MobiDBLite consensus disorder prediction 198 233 - -
Eupl03g01623 316 MobiDBLite consensus disorder prediction 280 316 - -
Eupl03g01623 316 CDD ZnF_GATA 225 263 IPR000679 GO:0006355|GO:0043565
Eupl03g01623 316 ProSiteProfiles Tify domain profile. 87 122 IPR010399 -
Eupl03g01623 316 MobiDBLite consensus disorder prediction 1 57 - -
Eupl03g01623 316 Pfam tify domain 93 121 IPR010399 -
Eupl03g01623 316 MobiDBLite consensus disorder prediction 135 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01623 Eupl-Chr3 43266237 43277914 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01623 40 268 Tify Gene Family AT1G51600 55.823 4.94e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Eupl03g01623 CCT 8.3e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01623 - - ming:122083996 362.073