Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01622 ATGATGGCCGCGGTGAATCCACAACCACTGCAATCCCGTCCCTTTGACGTCCATGAAGATCACATGCAGATCCCTATCCAGATCGACGACGACGAAGGCGGATATGACGCTGATGGATTCGGTGGTGATGACACGATGGATGATGTCGAAGACGTCCAGGTGAATTCGGGAAACCATGTTGATCACAGTGTTGCTTTGACGTCTCGGACGAGTGAGCTCACCCTGTCGTTCGAAGGCGAGGTTTATGTATTTAATGCGGTCACACCCGAAAAGGTGCAAGCAGTGCTATTGCTTTTGGGAGGGCGTGAAATCCCTACTGGTGTGCCTACCATTGACGTCACTTTCCATCAGAATAATAGGGGCATGGGTGATGGCCCACGGCGCTCAAATCTTTCACGAAGAATTGCTTCCCTGGTTAGGTTCCGTGAAAAACGGAAAGAGCGATGCTTTGAAAAGAAAATTAGGTACACTTGCCGCAAAGAGGTTGCCCAGAGGATGCATCGTAAGAATGGTCAGTTTGCATCGATAAAAGAGAGCTATAAGGAAGGGCTAGCGGCTTCTCCAAGTTGGGATCCTTCACAGAGCTGCCTTCAAGATGGTAGTACTCCTCGTCCGGAGACTGCTGTACGCAAATGCCAACATTGTGGCACCAGCGAGAAGTCCACTCCAGCAATGCGTCGTGGGCCAGCTGGTCCAAGGTCTCTATGCAATGCATGCGGGTTAATGTGGGCAAACAAGGGAACTTTGAGAGATCTCACTAAGGGTGGAAGGAATCTTTCTTTCGATCACAATGAGCAGGAAACTCCAGGTGATACTAAAGCTTTAATCATGGAGACACTGAGTCACACTGCTAATCCAGACGAGCAGGAAACTCCTGAAGGCGTAATGGGATACGGAAATCCTTCTGTCAACCCAGATGAGCAGGGAAGTCCAGAGGATATGAAGCCTTTACCTCTGGAGATCGAGAATCCTTCTTCTGGTCTGTATGAGCAGGGTTTGGATTTTCAGGAAACTTCTGAAGATCTGACTAAGCCTTTACATGTGGGAATTGAGAATCCATCAGTTGACCCTGATGAGCAGGGAACTTCTGATGATCTTGCTCATATTTCAACGGCTGATATAGACACTCCTGCCAACCTATATGACCAGTTTCCTGTGTCTCTGTATACTTCTATCTTCCAGAGTGACGCGAATGACTCCCACCTGGAGAGTGACGGGCAGGGACTTGATATCACTTCAAATGGTCATGACACTGAACTGTAG 1263 0.4861 MMAAVNPQPLQSRPFDVHEDHMQIPIQIDDDEGGYDADGFGGDDTMDDVEDVQVNSGNHVDHSVALTSRTSELTLSFEGEVYVFNAVTPEKVQAVLLLLGGREIPTGVPTIDVTFHQNNRGMGDGPRRSNLSRRIASLVRFREKRKERCFEKKIRYTCRKEVAQRMHRKNGQFASIKESYKEGLAASPSWDPSQSCLQDGSTPRPETAVRKCQHCGTSEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLTKGGRNLSFDHNEQETPGDTKALIMETLSHTANPDEQETPEGVMGYGNPSVNPDEQGSPEDMKPLPLEIENPSSGLYEQGLDFQETSEDLTKPLHVGIENPSVDPDEQGTSDDLAHISTADIDTPANLYDQFPVSLYTSIFQSDANDSHLESDGQGLDITSNGHDTEL* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01622 420 PANTHER GATA TRANSCRIPTION FACTOR 28 3 374 IPR045280 GO:0006355
Eupl03g01622 420 MobiDBLite consensus disorder prediction 284 326 - -
Eupl03g01622 420 MobiDBLite consensus disorder prediction 191 230 - -
Eupl03g01622 420 Pfam CCT motif 134 175 IPR010402 GO:0005515
Eupl03g01622 420 ProSitePatterns GATA-type zinc finger domain. 212 239 IPR000679 GO:0006355|GO:0043565
Eupl03g01622 420 ProSiteProfiles GATA-type zinc finger domain profile. 206 254 IPR000679 GO:0006355|GO:0043565
Eupl03g01622 420 ProSiteProfiles CCT domain profile. 134 176 IPR010402 GO:0005515
Eupl03g01622 420 SMART GATA_3 206 273 IPR000679 GO:0006355|GO:0043565
Eupl03g01622 420 Pfam tify domain 69 100 IPR010399 -
Eupl03g01622 420 ProSiteProfiles Tify domain profile. 66 101 IPR010399 -
Eupl03g01622 420 CDD ZnF_GATA 211 255 IPR000679 GO:0006355|GO:0043565
Eupl03g01622 420 MobiDBLite consensus disorder prediction 398 420 - -
Eupl03g01622 420 Pfam GATA zinc finger 212 248 IPR000679 GO:0006355|GO:0043565
Eupl03g01622 420 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 210 258 - -
Eupl03g01622 420 Gene3D - 204 264 IPR013088 GO:0006355|GO:0008270
Eupl03g01622 420 SMART tify_2 66 101 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01622 Eupl-Chr3 43240168 43259097 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01622 38 265 Tify Gene Family AT1G51600 51.681 1.13e-71 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Eupl03g01622 CCT 7.9e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01622 - - nnu:104595522 473.396