Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01601 ATGATGTCGCCGGATAGTATTCCGGATAATCCGGTCACCGACGATAACCAGAGCTCTGGAGGCCGTAAGACCGGATCACTGAAGCCACCGGAGCAAACCCTGACATGCCCACGCTGCGATTCTCCTAACACCAAATTCTGTTACTACAACAATTACAGTCTCACACAGCCAAGGCACTTCTGCAAGACATGTAGAAGGTACTGGACTAAAGGAGGCGCTTTACGAAACGTTCCGATTGGTGGCGGTTGTCGTAAGAACAAGAAGACTAAATCGGGTTCGAGACTATGCGGTGATTCGTCGGAGACGAGTGGGTTGAAGTCCTTTCATGGGCTCACCACAGGCCAGCTCGGTGGTGTTTATCAGTATAACCACTTTGTTCCATTTGGAGACCTAACTTCTGCTACTACTACTACTACTTCAGCTCCTCCTTGTTTCGAAATTGATGCGTCGGCAAGCTCTGCTTCTTTAATGGATTTTAATTACCCTGTTTCTTCAGTTTTTAAACAAGGAGGGACTGGAGTCCAACCTTCAGAAGTCTCACTGCTATCACTCTCAGGATGA 561 0.4777 MMSPDSIPDNPVTDDNQSSGGRKTGSLKPPEQTLTCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKTKSGSRLCGDSSETSGLKSFHGLTTGQLGGVYQYNHFVPFGDLTSATTTTTSAPPCFEIDASASSASLMDFNYPVSSVFKQGGTGVQPSEVSLLSLSG* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01601 186 MobiDBLite consensus disorder prediction 9 34 - -
Eupl03g01601 186 MobiDBLite consensus disorder prediction 1 34 - -
Eupl03g01601 186 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 26 132 IPR045174 GO:0003700|GO:0006355
Eupl03g01601 186 ProSiteProfiles Zinc finger Dof-type profile. 34 88 IPR003851 GO:0003677|GO:0006355
Eupl03g01601 186 Pfam Dof domain, zinc finger 32 88 IPR003851 GO:0003677|GO:0006355
Eupl03g01601 186 ProSitePatterns Zinc finger Dof-type signature. 36 72 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01601 Eupl-Chr3 42945818 42947334 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01601 28 91 C2C2-Dof Transcription Factor Family AT5G60200 79.688 4.50e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Eupl03g01601 zf-Dof 6.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01601 - - vri:117917796 242.276