Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01600 ATGGCTTCTCGTTTCTGGACACAGGGTGACAGTGACACTGAGGAGGAAGAGGAGGAGGTGGAGAATGATTACGAAGATGGAGCTGATAATGGTGGTGGAGAGGCTGCCGGAGCGGCCGCTGGGAGCAGATACCTGCAGGGGAATGCGAGCGATAGTGATGACTCTGAAGGTCAGAGGCGTGTTGTCCGATCTGCCAAAGACAAGCGCTTTGAGGAGATGTCGGCCACCGTAGACCAGATGAAGAACGCCATGAAGATCAATGACTGGGTGAGCCTCCAGGAGAACTTCGACAAGATTAATAAGCAGCTTGATAAGGTCATCCGGGTCACGGAATCCGAAAAGGTCCCGACCCTCTACATCAAAGCTCTTGTAATGTTGGAGGACTTCTTGAGTGAGGCTCTGGCCAATAAGGACGCCAAGAAGAAGATGAGTAGTAGCAATGCCAAGGCCTTGAATTCCATGAAACAAAAACTTAAGAAGAACAACAAACAATATGAGGATTTGATCAATAAGTTCAGGGAGAGTCACGAAAGCGAGGATGAAGGGCAAGGGGATGAGCAGACAGAGGAGGAGGAGGATTCGGGTTCAGAGTTCGAGGAGGACCCGTCAAAAATGGCAATCATGTCTGAGTCGGAAAATGGTGAGGATGGAGATGCGGAGGACGGGGATAACCAAGCCGAGGGCGGTGGGGGTTGGGAGAAGATGATGAGCAGGAAAGATAAGCTCATGGACAAACAATTCATGAGGGACCCGAGTGAGATCACGTGGGATACAGTTGATAAGAAGCTCAAGGAGATTGTAGCTGCAAGGGGGCGGAAGGGAACTGGAAGGGTCGAGCAGGTCGAACAGCTCACTTTTTTAACAAAAGTTGCCAAGACCCCTGCCCAGAAGCTTGAGATCCTCTTCAATGTCGTATCTGCTCAGTTTGATGTCAACCCAAGTCTCAGCGGGCACATGCCTGTAAATGTGTGGAAGAAGTGCGTGGTAAACATGCTTATCATTCTCGACATCCTTGAGCAGTATCCAAACATTGTGGTGGATGACTCGGTGGAGCCTGAAGAGAACGAGACCCAGAAGGGAGTGGATTATAAGGGGACGATTCGGGTTTGGGGGAACTTGGTTGCCTTTCTTGAGCGGATGGATGTTGAGTTCTTCAAAAGCTTGCAATGCATTGATCCTCACACTCGGGAGTACGTGGAGAGGCTCAGGGATGAGCCTATGTTCTTTGTTCTTGCTCAAAATGTTCAGGATTACTTAGAACGGATTGGGGATTTTAAGGCAGCTGCAAAGGTTGCATTGAGACGGGTCGAGCTTATTTATTATAAGCCTCAAGAGGTTTATGATGCAATGAGAAAATTGGCTGAGCAGACGGAGGGTGGAGAGAATGAGGAAACTGTGGCAGATGAAGAGCCCCAAGTGGTCGAGGAAACTAGGGGTCCACCAGCTTTTGTTGTTACTCCCGAGCTTGTGCCTCGAAGACCCACTTTTCCAGAGAACTGTAGGACATTGATGGATGAGCTTGTCTCTCTTATTTACAAGTATGGGGATGAGCGGACTAAAGCTCGTGCTATGCTCTGTGATATATATCACCATGCTATCATGGACAAGTTCTCAAATTCACGAGATTTATTGCTGATGAGTCACTTGCAGGATGGGGTTCAGCACATGGACATTTCAACACAAATCCTTTTCAACAGGGCTATGGCCCAACTTGGTCTATGTGCATTTAGAGTTGGACTTATTACAGAAGCACACGGTTGCCTTTCTGAGCTATATGCGGGTGGAAGGGTGAAGGAGTTACTTGCACAAGGTGTCTCACAGAGCCGTTATCATGAGAAGACTCCAGAGCAGGAAAAGCTGGAACGAAGACGGCAGATGCCTTACCACATGCACATAAATCTTGAGCTCCTGGAGGCTGTCCATTTGATATGTGCCATGCTCCTGGAGGTTCCCAACATGGCGGCCAACACTCATGACACCAAACGCAAAGTCATAAGCAAGAACTTCCGTAGGCTGCTCGAGATGAGCGAGAGGCAGACCTTCACGGGCCCCCCTGAAAATGTCCGGGACCACATTATGGCTGCCACTAGGGCTCTTGGCAAGGGAGATTTCCAGAAGGCCTTTGATGTCATCAAGTCCCTTGATGCCTGGAAGCTCCTCAGGAACCGAGAGAATGTTCTTGAGATGCTCAAGACCAAGATCGAGGAAGAAGCTCTGAGGACCTACCTGTTCACGTACTCCTCATGTTATGATTCCCTGAGCTTGGACCAGCTCACCACAATGTTTGACCTCTCGGAAGCCCAAGCACACAGCATCGTGAGTAAGATGATGATTATGGAGGAGCTCCATGCAAGCTGGGATCAGCCTACCCGGTGCATTGTCTTCCACAACGTGGAGCCCACGAGGTTACAGGCTCTCGCATTCCAGTTGACAGAGAAGCTTTCAATCCTTGCAGAAAGCAACGAGAAGGCATTTGAGGCGAGGACAGGTGGAGGGCTGGATGGCTTGCCCCAGAGGCGTAGGGAGGGCCAGGACTATGCTGGGGTTACTGCGGGCAAGTGGCAAGAGAACCTCTCTCAGGGAAGGCAAGTTGGTTATGGCGGGCGTTCAGGATATAGTGGTGGTGGGAGACTATCAGCTTCAGGAGGAGGATATTCTAGAGATCGAGCGGGGCAGTTGCGAGGAACTGGAGGGTATTCAGCAGGTTACCAGAGCACCCGTTATCAAGATGCATACAGCGGGGTTGGGAGGACTCCCTATCAGACAGGTTCAGCGGTGAGGGGATCGCAGATGGATGCTTCAGCTCGCATGGTAAGTCTGAACAGGGCGGGTCGCGTTCAGTAG 2844 0.5049 MASRFWTQGDSDTEEEEEEVENDYEDGADNGGGEAAGAAAGSRYLQGNASDSDDSEGQRRVVRSAKDKRFEEMSATVDQMKNAMKINDWVSLQENFDKINKQLDKVIRVTESEKVPTLYIKALVMLEDFLSEALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEDLINKFRESHESEDEGQGDEQTEEEEDSGSEFEEDPSKMAIMSESENGEDGDAEDGDNQAEGGGGWEKMMSRKDKLMDKQFMRDPSEITWDTVDKKLKEIVAARGRKGTGRVEQVEQLTFLTKVAKTPAQKLEILFNVVSAQFDVNPSLSGHMPVNVWKKCVVNMLIILDILEQYPNIVVDDSVEPEENETQKGVDYKGTIRVWGNLVAFLERMDVEFFKSLQCIDPHTREYVERLRDEPMFFVLAQNVQDYLERIGDFKAAAKVALRRVELIYYKPQEVYDAMRKLAEQTEGGENEETVADEEPQVVEETRGPPAFVVTPELVPRRPTFPENCRTLMDELVSLIYKYGDERTKARAMLCDIYHHAIMDKFSNSRDLLLMSHLQDGVQHMDISTQILFNRAMAQLGLCAFRVGLITEAHGCLSELYAGGRVKELLAQGVSQSRYHEKTPEQEKLERRRQMPYHMHINLELLEAVHLICAMLLEVPNMAANTHDTKRKVISKNFRRLLEMSERQTFTGPPENVRDHIMAATRALGKGDFQKAFDVIKSLDAWKLLRNRENVLEMLKTKIEEEALRTYLFTYSSCYDSLSLDQLTTMFDLSEAQAHSIVSKMMIMEELHASWDQPTRCIVFHNVEPTRLQALAFQLTEKLSILAESNEKAFEARTGGGLDGLPQRRREGQDYAGVTAGKWQENLSQGRQVGYGGRSGYSGGGRLSASGGGYSRDRAGQLRGTGGYSAGYQSTRYQDAYSGVGRTPYQTGSAVRGSQMDASARMVSLNRAGRVQ* 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01600 947 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 729 817 IPR000717 -
Eupl03g01600 947 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 49 659 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Eupl03g01600 947 FunFam Eukaryotic translation initiation factor 3 subunit C 726 804 - -
Eupl03g01600 947 Coils Coil 148 175 - -
Eupl03g01600 947 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 940 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Eupl03g01600 947 MobiDBLite consensus disorder prediction 53 71 - -
Eupl03g01600 947 MobiDBLite consensus disorder prediction 11 28 - -
Eupl03g01600 947 MobiDBLite consensus disorder prediction 1 71 - -
Eupl03g01600 947 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 887 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Eupl03g01600 947 MobiDBLite consensus disorder prediction 181 198 - -
Eupl03g01600 947 MobiDBLite consensus disorder prediction 137 159 - -
Eupl03g01600 947 Gene3D - 731 802 IPR036388 -
Eupl03g01600 947 Pfam PCI domain 668 797 IPR000717 -
Eupl03g01600 947 ProSiteProfiles PCI domain profile. 628 800 IPR000717 -
Eupl03g01600 947 MobiDBLite consensus disorder prediction 174 234 - -
Eupl03g01600 947 SUPERFAMILY "Winged helix" DNA-binding domain 726 800 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01600 Eupl-Chr3 42933829 42941474 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01600 1 946 Eukaryotic Initiation Factors Gene Family AT3G56150 67.576 0.0 1196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01600 K03252 - msin:131231449 1508.43