Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01594 ATGGACTTTGATGATCATGAAGAACAGGAAGAGGAGATCGGGATGCCTGTATCAGCGAGTTACGAATCGCTTGGGAACTCAGCGAGAGCGAAAATGGTAAGTGGAGGAGAGGTGGCTGCTGTGGGGAGAAAAGCGCTGAGTAGGTATAGAGAGTGCTTGAAGAATCATGCGGTGAGTATCGGAGGGCATGCGGTGGATGGATGTGGTGAGTTCATGGCTGCCGGTGACGAAGGCACACTTGATGCACTAAAATGTGCCGCTTGCAATTGCCACCGCAACTTTCACCGCAAGGAGACTGATGGAGATACGCCCTTTCATCACCAAATCACGCAGTACTATCGTGCGCCGGCGGGGTACTTACAAGTGGCGCCGCATCATCGGCCGTTAGCGCTGCCGTCGACTTCCGGAGGCGGTGGACACAGCCGGGATGATCAAGAGGACGTTTCGAACCCTAGTGGTGGTGCGAAGAAACGTTTCCGGACTAAGTTCACGCAGGAGCAGAAGGACAAGATGCTGGCGTTCGCGGAGAGTGTGGGGTGGAGGATCCAGAAGCACGACGAGGCCGCCGTGCAGCAGTTTTGTACGGAGACTTGTGTTAAGCGGCACGTGCTCAAGGTGTGGATGCACAACAACAAGCATACACTGGGTAAGAAACCCTAA 660 0.5455 MDFDDHEEQEEEIGMPVSASYESLGNSARAKMVSGGEVAAVGRKALSRYRECLKNHAVSIGGHAVDGCGEFMAAGDEGTLDALKCAACNCHRNFHRKETDGDTPFHHQITQYYRAPAGYLQVAPHHRPLALPSTSGGGGHSRDDQEDVSNPSGGAKKRFRTKFTQEQKDKMLAFAESVGWRIQKHDEAAVQQFCTETCVKRHVLKVWMHNNKHTLGKKP* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01594 219 Pfam ZF-HD protein dimerisation region 48 99 IPR006456 -
Eupl03g01594 219 NCBIfam homeobox domain, ZF-HD class 156 212 IPR006455 -
Eupl03g01594 219 Gene3D - 140 217 - -
Eupl03g01594 219 MobiDBLite consensus disorder prediction 140 162 - -
Eupl03g01594 219 MobiDBLite consensus disorder prediction 127 162 - -
Eupl03g01594 219 FunFam Zinc-finger homeodomain protein 2 143 217 - -
Eupl03g01594 219 SUPERFAMILY Homeodomain-like 144 217 IPR009057 -
Eupl03g01594 219 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 48 98 IPR006456 -
Eupl03g01594 219 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 49 98 IPR006456 -
Eupl03g01594 219 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 32 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01594 Eupl-Chr3 42840922 42843554 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01594 1 215 ZF-HD Transcription Factor Family AT4G24660 55.605 4.09e-76 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Eupl03g01594 ZF-HD_dimer 2.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01594 - - nnu:104608618 391.349