Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01593 ATGGGTTATCTCTCTTGCAAATCAGACTCTGTAATCCGCACTTGCGATCCCTACAACTGGGACAGAAAGAAGAAACCATCATCATCATCATCATCATCGTCAAACAACACAAGAACCAAGAAGAAATCACCGAAGATCAGACGGTTCTCCTACGCTGATCTTGAATCTGCTACCGGTGGATTCTCTTCCCAGTGTTTCCTCGGCAAAGGTAGCCATGGTAGTGTCTACAAAGCTGTTCTTGATGATGGAAAGCTCATCGTGGCCGTTAAAAAGACGACGACGATATCACTTGAAGAAGACAATACTAACAACACTGTCACTCCAGGAGACAACGAGATCGAAATCCTTTCCAGAATCCGAAATCCTGGCCTTGTGAATCTCTTAGGGTTCAGTCTCGACTCTCATGACAAGAAACTAATTGTCGTTGAGTTCATGGCTAATGGATCTCTCTACGATCTTCTCCACTCCAACCCTCGACCGCCCGCTTGGCCGAAGCGACTCCGGTTCGCCTTACAAATTGCTAAAGCGGTCGAGACTCTGCACTCTTCCAACCCCCCGGTTATCCACAGAGATATAAAGTCGTCTAACATCCTCATCGACGGGAACTGGAACGCTAGGTTAGGGGATTTCGGGCTGGCGCTGAGGGGATACGTGGAGGATGTAAGGATAAGGTGTACTCCCCCTGCGGGTACGTTAGGGTATCTCGACCCTGGCTACGTTGCGCCGGAGAATCTCAGTAACAAGAGCGACGTCTTCAGTTTTGGGATTCTTTTGTTGGAGATTCTTAGTGGCAGGAATGCCATTGATATGAATTACAGTCCAGCGTCTGTTGTCGATTGGGCCCTACCACTCATCAAACAAGGGGAGTTCATTGCGATTTATGATCCCCGGATCGGCCCCCCTGAAGATCCCTCGGTTATGCGGCAGCTAGCGGTGATGGCTGCTCGGTGCATCAGGTCGACAACCGAGAAGAGGCCGTCGATGGCAGAGGTGGTGGATTGCCTTAGAGCTGTTAGCAAGAGGGTGTCGTCGCCGATTTGGAACAATCTCAGGAGTAGGATGAGGAAACCAACGTTATTGATCGGAGAGGAGGCGATCAACGCTGGCGAAGAGGTCGTTAAGACTTCGAAACATGGGAGTAGAACCCCATTGTTAAGGAACAGAAAAGTATCTAGTGTTCAGCCCGGGATGGATTTTCGGAGAGAACCGAGTGGTACAGTTGGTAATCATGTTCGTCGATCCAATTCGATTGGGTCATTTAGCGAAATTAAATTGGGGTCCGATACTAATTTGGTTGTCAATCAGCTTGATATGGTTCGGAGGAAATCAGGTTTGGCTGTAAGAATGCCTGCTGTAAGACTCAACAAATCAAGGTCTTTGGGAGTGTTGCAAAGTACACGCCTGGTTCATGATAGCGAAAAAGGATTTGTGTTTCAGCTGGTGAAGAACCCTCAGCTTAGAGGGTTAGACATGTCAAGGCTGGTGATAAGTGTCGATAAAGGTCCCCGGAAGAAGATACTGGAGAGGAAGCAATCCATGTAA 1542 0.4838 MGYLSCKSDSVIRTCDPYNWDRKKKPSSSSSSSSNNTRTKKKSPKIRRFSYADLESATGGFSSQCFLGKGSHGSVYKAVLDDGKLIVAVKKTTTISLEEDNTNNTVTPGDNEIEILSRIRNPGLVNLLGFSLDSHDKKLIVVEFMANGSLYDLLHSNPRPPAWPKRLRFALQIAKAVETLHSSNPPVIHRDIKSSNILIDGNWNARLGDFGLALRGYVEDVRIRCTPPAGTLGYLDPGYVAPENLSNKSDVFSFGILLLEILSGRNAIDMNYSPASVVDWALPLIKQGEFIAIYDPRIGPPEDPSVMRQLAVMAARCIRSTTEKRPSMAEVVDCLRAVSKRVSSPIWNNLRSRMRKPTLLIGEEAINAGEEVVKTSKHGSRTPLLRNRKVSSVQPGMDFRREPSGTVGNHVRRSNSIGSFSEIKLGSDTNLVVNQLDMVRRKSGLAVRMPAVRLNKSRSLGVLQSTRLVHDSEKGFVFQLVKNPQLRGLDMSRLVISVDKGPRKKILERKQSM* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01593 513 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Eupl03g01593 513 Coils Coil 503 513 - -
Eupl03g01593 513 ProSitePatterns Protein kinases ATP-binding region signature. 67 91 IPR017441 GO:0005524
Eupl03g01593 513 SMART serkin_6 61 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl03g01593 513 Pfam Protein tyrosine and serine/threonine kinase 66 335 IPR001245 GO:0004672|GO:0006468
Eupl03g01593 513 MobiDBLite consensus disorder prediction 24 39 - -
Eupl03g01593 513 MobiDBLite consensus disorder prediction 16 45 - -
Eupl03g01593 513 Gene3D Transferase(Phosphotransferase) domain 1 145 351 - -
Eupl03g01593 513 Gene3D Phosphorylase Kinase; domain 1 22 144 - -
Eupl03g01593 513 FunFam Serine/threonine-protein kinase-like protein 145 348 - -
Eupl03g01593 513 PANTHER OS01G0253100 PROTEIN 29 340 - -
Eupl03g01593 513 SUPERFAMILY Protein kinase-like (PK-like) 35 335 IPR011009 -
Eupl03g01593 513 ProSiteProfiles Protein kinase domain profile. 61 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01593 Eupl-Chr3 42824697 42826755 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01593 41 345 Receptor kinase-like Gene Family AT3G59420 44.695 2.30e-74 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Eupl03g01593 PK_Tyr_Ser-Thr 9.4e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01593 - - nnu:104603954 672.544