Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Eupl03g01587 | ATGGCTCCCAGCTTCGACTGCACAGCCTCAAGTCTTCTTTGTGCAGAAGACAACACCATTCTTATGTGCTTTGATGATGCTGTTGATGATCAGTTTGGGGAGTCTGCTTGGGAGCAACGAAACCATCGAACCCATAGTCAAAACCAGAGCTTTTCTCATGGTGGGGATTTCTTGGTTGGGTTCCCATTGCAGAGTTTGGAATGTTTGACTATGATGGTTGAGAGGGAACGCAAGCATTTGCCGAGAGAAGATTACCTGAAGAGGTTGCAGAGTGGGGACTTGGACCTAGCCGTCAGAAGGGATGCTGTTGATTGGATTGGAAGGGTTCATGCTTACTACAGTTTTGGGCCATTGAGTGCCTATTTATCAATAAATTACTTGGATCGGTTCCTCTCAGCTTATCAACTTCCTAGTGGTAAAGCTTGGATGATGCAGCTGTTAGCTGTGGCCTGTTTATCTCTAGCAGCTAAAATGGAAGAGACAGAAGTGCCGTTGTCTCTAGATTTACAGGTTGGTGAATCCAAATTTGTCTTTGAAGCTAGAACGATACAGAGAATGGAGCTTCTTGTGCTGAGCACATTGAAGTGGAGAATGCAAGCTGTGACGCCTTTCTCCTTCATAGACTATTTCCTTTGTAAGATCAATGATGAACAATGTCCTCCAAGATCATCGATTTCTCGATCTATCGATCTCATCTTAAGCACAATTAAAGGGATTGACTTCTTGCAATTCCGGCCTTCCGAGGTTGCTGCAGCAGTGGCAATATCTGTATCAGGGGATACCCAAACACTGGACCTTGACAAGACCGTATCTGGTTTTATTCAACATTTACAAAAGGAGAGAGTGTTGAAATGTCTTGAACTGATCCAAGATCTGTCATTGATAAGTGGGTCTGTTAAGGTTGCAAGTGCTTCAGTTACATCTGTGCCTCAGAGCCCAATTGGGGTGCTGGATGCTGCATGCTTGAGCTATAAAAGTGATGAATTAGCAGTTGGGTCAAGTGCAAATTCTTCTCGTACAAGTCCAGATGCTAAGAGGAGGAAACTAAACAGACCATCTGAAGTAGACTTCAAGTCCTGA | 1080 | 0.4417 | MAPSFDCTASSLLCAEDNTILMCFDDAVDDQFGESAWEQRNHRTHSQNQSFSHGGDFLVGFPLQSLECLTMMVERERKHLPREDYLKRLQSGDLDLAVRRDAVDWIGRVHAYYSFGPLSAYLSINYLDRFLSAYQLPSGKAWMMQLLAVACLSLAAKMEETEVPLSLDLQVGESKFVFEARTIQRMELLVLSTLKWRMQAVTPFSFIDYFLCKINDEQCPPRSSISRSIDLILSTIKGIDFLQFRPSEVAAAVAISVSGDTQTLDLDKTVSGFIQHLQKERVLKCLELIQDLSLISGSVKVASASVTSVPQSPIGVLDAACLSYKSDELAVGSSANSSRTSPDAKRRKLNRPSEVDFKS* | 360 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Eupl03g01587 | 359 | SMART | cyclin_7 | 104 | 192 | IPR013763 | - | |
| Eupl03g01587 | 359 | MobiDBLite | consensus disorder prediction | 332 | 359 | - | - | |
| Eupl03g01587 | 359 | CDD | CYCLIN_AtCycD-like_rpt2 | 201 | 289 | - | - | |
| Eupl03g01587 | 359 | CDD | CYCLIN_AtCycD-like_rpt1 | 98 | 196 | - | - | |
| Eupl03g01587 | 359 | Gene3D | - | 82 | 199 | - | - | |
| Eupl03g01587 | 359 | ProSitePatterns | Cyclins signature. | 99 | 130 | IPR006671 | - | |
| Eupl03g01587 | 359 | PANTHER | CYCLINS | 69 | 296 | IPR039361 | - | |
| Eupl03g01587 | 359 | FunFam | D6-type cyclin | 195 | 287 | - | - | |
| Eupl03g01587 | 359 | SMART | Cyclin_C_2 | 201 | 325 | IPR004367 | - | |
| Eupl03g01587 | 359 | SUPERFAMILY | Cyclin-like | 64 | 198 | IPR036915 | - | |
| Eupl03g01587 | 359 | Pfam | Cyclin, C-terminal domain | 201 | 296 | IPR004367 | - | |
| Eupl03g01587 | 359 | Gene3D | - | 69 | 287 | - | - | |
| Eupl03g01587 | 359 | FunFam | D2/4-type cyclin | 82 | 194 | - | - | |
| Eupl03g01587 | 359 | SUPERFAMILY | Cyclin-like | 183 | 294 | IPR036915 | - | |
| Eupl03g01587 | 359 | MobiDBLite | consensus disorder prediction | 341 | 359 | - | - | |
| Eupl03g01587 | 359 | Pfam | Cyclin, N-terminal domain | 68 | 198 | IPR006671 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Eupl03g01587 | Eupl-Chr3 | 42650209 | 42652766 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Eupl03g01587 | 64 | 279 | Core Cell Cycle Gene Families | AT5G65420 | 60.274 | 2.37e-87 | 263 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Eupl03g01587 | K18810 | - | nnu:104603896 | 520.005 |