Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01560 ATGTCAGATTTGACGCAGTTACAGTCGCTTGATATTTCCCGTAATATGCTCTATGGAGGAATTGAAGTTCTGGGTCTCCTAACAAGTCTCACTTCCTTGAATATCTCTTACAACAACTTCTCAGGTCCTATCCCTGTAACTCCATTCTTCAGGACTCTATCTTCGAATTCGTACTTCCAGAATCCAAACCTCTGCGAATCCGTCGATGGGTCTACCTGTTCTTCAGGTCTAATTCGGAGAAGAGGACTAAAATCCGCCAAAACAGTAGCTTTAGTCTCTGTGACTCTTGCTTCAGTTACAATGGCAGTTCTTGCATCTTGGATTCTTGTAACCAGGAATAAGAGATACACAGCCGATAAATCCTCTGGTTCAGCCTCTTCATCTGGGGCTGAAGATTTCTCATATCCATGGACGTTCATCCCATTTCAGAAGCTCAATTTCACGATAGAAAACATCTTGGACTGCCTGAAAGAAGAGAATGTGATTGGTAAAGGGTGTTCTGGGATTGTTTATAAGGCTGAGATGCCCAATGGGGAACTGATTGCTGTGAAGAAGCTCTGGAAAACAAAGAAAGACGAAGAACCCGTGGACGCTTTCGCTTCAGAAATTCAAATTCTTGGGCACATCCGTCATCGAAACATCCTGAAGCTCCTGGGTTATTGTTCAAATAAGTGCATTAAGCTCCTGCTCTATAACTATATTTCAAATGGGAACCTGCAACAACTGTTGCAGGGGAACAGGAACTTGGATTGGGAAACCAGGTATAAGATTGCTGTAGGTTCTGCACAGGGTCTCGCCTACCTTCATCATGATTGTGTGCCAGCAATTCTTCACAGAGACGTGAAGTGCAACAACATACTTCTGGATTCCAAGTTTGAGGCTTATCTAGCAGATTTCGGGCTGGCCAAGCTGATGAACTCTCCGAATTATCACCACGCAATGTCCAGAGTTGCTGGATCTTATGGGTATATTGCACCAGAGTATGGATACACTATGAACATAACTGAGAAGAGCGACGTCTACAGCTACGGCGTGGTCTTGCTGGAGATCCTCAGCGGCCGAAGTGCAGTTGAGCCTCAGATCGGCGACGGGCTCCACATAGTTGAGTGGGTGAAGAAGAAGATGGGGAGTTTTGAGCCTGCTATAACTGTATTGGATTCAAAGCTTCGGGGCCTACCCGATCAGATGGTGCAAGAGATGCTCCAAACACTCGGAATCGCGATGTTCTGTGTGAATTCATCACCAACGGAACGACCCACCATGAAGGAAGTGGTGGCATTGTTGATGGAGGTGAAGAGCCCACCTGAAGAATGGGGGAAGACTTCTCAACCTCTCATAAAACAGTCGTCAGACCAGAGCTGA 1362 0.4589 MSDLTQLQSLDISRNMLYGGIEVLGLLTSLTSLNISYNNFSGPIPVTPFFRTLSSNSYFQNPNLCESVDGSTCSSGLIRRRGLKSAKTVALVSVTLASVTMAVLASWILVTRNKRYTADKSSGSASSSGAEDFSYPWTFIPFQKLNFTIENILDCLKEENVIGKGCSGIVYKAEMPNGELIAVKKLWKTKKDEEPVDAFASEIQILGHIRHRNILKLLGYCSNKCIKLLLYNYISNGNLQQLLQGNRNLDWETRYKIAVGSAQGLAYLHHDCVPAILHRDVKCNNILLDSKFEAYLADFGLAKLMNSPNYHHAMSRVAGSYGYIAPEYGYTMNITEKSDVYSYGVVLLEILSGRSAVEPQIGDGLHIVEWVKKKMGSFEPAITVLDSKLRGLPDQMVQEMLQTLGIAMFCVNSSPTERPTMKEVVALLMEVKSPPEEWGKTSQPLIKQSSDQS* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01560 453 SMART serkin_6 156 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl03g01560 453 SUPERFAMILY L domain-like 2 65 - -
Eupl03g01560 453 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 137 233 - -
Eupl03g01560 453 SUPERFAMILY Protein kinase-like (PK-like) 136 429 IPR011009 -
Eupl03g01560 453 Gene3D Ribonuclease Inhibitor 1 77 IPR032675 -
Eupl03g01560 453 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 234 446 - -
Eupl03g01560 453 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 3 432 - -
Eupl03g01560 453 ProSiteProfiles Protein kinase domain profile. 156 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl03g01560 453 Pfam Protein kinase domain 157 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl03g01560 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 276 288 IPR008271 GO:0004672|GO:0006468
Eupl03g01560 453 ProSitePatterns Protein kinases ATP-binding region signature. 162 185 IPR017441 GO:0005524
Eupl03g01560 453 Gene3D Transferase(Phosphotransferase) domain 1 234 444 - -
Eupl03g01560 453 Gene3D Phosphorylase Kinase; domain 1 124 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01560 Eupl-Chr3 42252864 42254963 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01560 7 451 Receptor kinase-like Gene Family AT5G65700 44.323 6.14e-117 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Eupl03g01560 Pkinase 2.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01560 - - qsu:112014756 807.749