Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01556 ATGGCGAATGCTCAACCACCACCTGCTCAGCAAACCCAGCAACAGGAAACACAAAAGCAGCCGCAGCTGCAGGCGGCAGAAGGTTTCAGCAACGCTTCTCTGTATGTTGGAGATCTCGACCCATCTGTCATCGAAGGCCAGCTCTATGATCTCTTTAGCCAGGTCGCTCCAGTCGTCTCGATTAGGGTTTGCAGGGATCAGATTAGGAGGGTCTCTCTTGGTTACGCTTACGTTAATTTTAACAACGCTCAGGACGCTAGTAATGCGTTGGAGATTTTGAATTTTACATCCATCAATGGAAAACCTATCAGGATCATGTTCTCACATCGAGATCCAAGTATTCGAAAAAGCGGACATGCCAATGTATTTATTAAGAATTTGGACACAACTTTAGATAACAAGGCATTGCATGATACTTTTGCTGCGTTTGGTACTGTCCTTTCTTGCAAGGTGTCCACTGATAACAATGGTCAGTCTAAAGGATATGGGTTTGTACAGTTTGAACAGGAGGAAGCTGCACAAAATGCCATCAAACGTTTAAATGGGATGTTGATAAATGATAAACAAGTCTATGTTGGCCTTTTTGTTCGTAGACAAGAAAGAGATCAACCAAATGGATCATCAAAGTTTACTAATGTATATGTAAAAAATTTGTCTGAAACAACTACTGATGAGGACCTTAAGAAGGTTTTTAGCAATTATGGTCCTATCACTAGTGCAGTTATAATGAGGGATGCAAATGGAAATTCCAGAGGTTTTGGTTTTGTCAATTTTCAGAACCCAGATGATGCTTCTTCTGCAGTTGAGCAACTGAATGGAACTACATTTAGTGATGACAAGGTCTGGTATGTTGGGAAGGCTCTGAGAAAAGCTGAAAGAGAGGCTGAGTTGAAGTCCAAATATGAACAGGAAAGAAATGGTAGACTAGAAAAACTACAAGGGGCTAATTTATATCTGAAAAATCTTGATGATAACATCAACGATGAAAGACTGAAGGAGTTGTTTTCTGAATTTGGCACTGTAACCTCCTGCAAGGTCATGCTTGATCCACAAGGGCAGAGCAGGGGTTCTGGTTTTGTTGCATTTTCTACCCCTGAGGAAGCTACTAGAGCTGTAAATGAAATGAATGGGAAGATGATTGGACGGAAGCCTCTGTATGTTGCTGTGGCCCAACGCAAAGAAGAAAGGAAGGCACGGCTGCAGGTGCACTTTTCTCAAATTCGAGCACCTGGTGGGATGGCTCCTGTGGCCTCAGGTATGCCTGGCTTTCATCCTGGGGGACCTAGGCTTCCCCCTCAGCAGCTGTATTTTGGTCAAGGTACTCCTGGTTTCATTCCCCCTCAGCCTGCTGGGTATGGCTTCCAGCAACAACTGTTGCCTGGAATTCGGCCAGGTGTTGCCCCAAACTTTATAATGCCATACCACGTTCAGAGGCAAGGACAACCTGGACAGAGGATGAGTATAAGGAGGGGTGGAAACCCACAACAGATGCAGCAGCAGCAGTTGATACAGCGTAATGCGAATCAAGGCTTCAGATACATGCCAAACACACGGAATGGGGTGGACTCATCTATGGTAGCTCATGGTCTTATGGGTCCAATGATGCCATTGCCACTTGACGTTTCAGGGATGCCTGTGGCTCCAATGGACGCACAGCGCCCTGGGCCAGTGCCAATTACAGCGCTTGCCTCTGCTTTAGCATCAGCAAGCCCTGAACATCAACGTCTGATGCTGGGAGAGCAGCTATTTCCGCTTGTGGAACGACTCGAGCATGATCTTGCAGGTAAAGTCACTGGATGCTGCTGGAGATGGACCAAACAGAGGTCCTCCACCTCATAG 1839 0.4579 MANAQPPPAQQTQQQETQKQPQLQAAEGFSNASLYVGDLDPSVIEGQLYDLFSQVAPVVSIRVCRDQIRRVSLGYAYVNFNNAQDASNALEILNFTSINGKPIRIMFSHRDPSIRKSGHANVFIKNLDTTLDNKALHDTFAAFGTVLSCKVSTDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRRQERDQPNGSSKFTNVYVKNLSETTTDEDLKKVFSNYGPITSAVIMRDANGNSRGFGFVNFQNPDDASSAVEQLNGTTFSDDKVWYVGKALRKAEREAELKSKYEQERNGRLEKLQGANLYLKNLDDNINDERLKELFSEFGTVTSCKVMLDPQGQSRGSGFVAFSTPEEATRAVNEMNGKMIGRKPLYVAVAQRKEERKARLQVHFSQIRAPGGMAPVASGMPGFHPGGPRLPPQQLYFGQGTPGFIPPQPAGYGFQQQLLPGIRPGVAPNFIMPYHVQRQGQPGQRMSIRRGGNPQQMQQQQLIQRNANQGFRYMPNTRNGVDSSMVAHGLMGPMMPLPLDVSGMPVAPMDAQRPGPVPITALASALASASPEHQRLMLGEQLFPLVERLEHDLAGKVTGCCWRWTKQRSSTS* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01556 612 FunFam Polyadenylate-binding protein 25 120 - -
Eupl03g01556 612 SMART rrm1_1 316 388 IPR000504 GO:0003723
Eupl03g01556 612 SMART rrm1_1 33 106 IPR000504 GO:0003723
Eupl03g01556 612 SMART rrm1_1 121 193 IPR000504 GO:0003723
Eupl03g01556 612 SMART rrm1_1 212 285 IPR000504 GO:0003723
Eupl03g01556 612 PANTHER RNA BINDING PROTEIN 15 94 - -
Eupl03g01556 612 SUPERFAMILY PABC (PABP) domain 558 600 IPR036053 GO:0003723
Eupl03g01556 612 SUPERFAMILY RNA-binding domain, RBD 201 301 IPR035979 GO:0003676
Eupl03g01556 612 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 197 IPR000504 GO:0003723
Eupl03g01556 612 FunFam Polyadenylate-binding protein 121 194 - -
Eupl03g01556 612 CDD RRM4_I_PABPs 314 392 - -
Eupl03g01556 612 FunFam Polyadenylate-binding protein 298 403 - -
Eupl03g01556 612 FunFam Polyadenylate-binding protein 201 297 - -
Eupl03g01556 612 MobiDBLite consensus disorder prediction 1 23 - -
Eupl03g01556 612 Gene3D - 1 119 IPR012677 -
Eupl03g01556 612 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 315 392 IPR000504 GO:0003723
Eupl03g01556 612 SMART rrm2_1 316 388 IPR003954 GO:0003676
Eupl03g01556 612 SMART rrm2_1 212 284 IPR003954 GO:0003676
Eupl03g01556 612 SMART rrm2_1 121 193 IPR003954 GO:0003676
Eupl03g01556 612 Gene3D - 204 311 IPR012677 -
Eupl03g01556 612 SUPERFAMILY RNA-binding domain, RBD 312 410 IPR035979 GO:0003676
Eupl03g01556 612 Gene3D - 312 411 IPR012677 -
Eupl03g01556 612 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 104 IPR000504 GO:0003723
Eupl03g01556 612 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 190 IPR000504 GO:0003723
Eupl03g01556 612 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 280 IPR000504 GO:0003723
Eupl03g01556 612 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 317 385 IPR000504 GO:0003723
Eupl03g01556 612 Pfam Poly-adenylate binding protein, unique domain 566 599 IPR002004 GO:0003723
Eupl03g01556 612 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 32 599 IPR006515 GO:0003723
Eupl03g01556 612 SUPERFAMILY RNA-binding domain, RBD 32 201 IPR035979 GO:0003676
Eupl03g01556 612 SMART poly_2 570 609 IPR002004 GO:0003723
Eupl03g01556 612 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 558 612 IPR002004 GO:0003723
Eupl03g01556 612 CDD RRM3_I_PABPs 210 290 - -
Eupl03g01556 612 Gene3D - 120 194 IPR012677 -
Eupl03g01556 612 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 289 IPR000504 GO:0003723
Eupl03g01556 612 CDD RRM1_I_PABPs 33 112 IPR034364 -
Eupl03g01556 612 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
Eupl03g01556 612 CDD RRM2_I_PABPs 118 193 IPR045305 -
Eupl03g01556 612 Gene3D - 554 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01556 Eupl-Chr3 42224490 42231651 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01556 31 604 Eukaryotic Initiation Factors Gene Family AT1G71770 58.291 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01556 K13126 - nnu:104600166 1004.97