Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01518 ATGATAGCTCTCTCTTCAGTCTCATCCCTCTCACGTTCTTACAATTTCTTCTGTTTCCCCTCTTTAAATCTCACCAAATTCTCCCTATTTTCCTTCTCCTCCGCTGCTTCTCCCGCCAATACCTCGAATTCGGACCCCTTCATCGTCGATTACCTGATCGAAACCTTCGGATTCTCCAAAACCCAAGCCTTTTCTCTTTCGAAACGTTTCCGGAATGCTAAAGGCCCCGAAAAACCCGACTCCGTTCTCCACCTTCTCCGGCATCTCGGATTCTCAGAAACCCATATCCGAGGCGCTGTCCGAGTTACACCCCAAATCCTCTTCGCCGATGTCGAGAAGACCCTTAAACCCAAACTCGGATTGTTCCAGCAACTGGGTCTCACCGGATTCGAGCTGGGTCACTTCGTTTCAAAGAATGCGACTCTTTTGACGGTTAGTTTGGATCGAAAATTGATCCCCTGCATCGAAATTCTCAAGAAAATCCTCTCCGTCGGTGGTGATCATCGAGATTTGATTCGGGTTTTGCAGAGATGCAACTGGATCATCTCCAAAGACCCAGAATCAAGGCTGCTACCCAACATTTCCTTCTTGCAGAGCTGTGGGATAATCGGGTCCCAGCTCGCAATGCTCTTGAAGCGGCAACCAGGTCTGTTCGTCAAGAGAGAATCCAATCTCAGAGACCTCGTTCGCAAGGTTGAAGAGATGGGTTTCTCTGCCGATTCGAGGATGCTGGTCCATGCTCTCTACACTCTCAATTGCATTAGTCCCGAGACCCTTCGGAGGAAATTTAAGCTGCTTTGGAGTTTTGGGTTCTCAGAAGGGGAGTGCATGGCGATGTTCAGAAGGACGCCGGGCTTGCTAAGGACTTCCGAGGAGAAGCTGAGATTGGGAATTGAGTTCTTAATGAACACTGTTGGGATCGAAAGAACGGCGTTGGTTCATCAACCAGCATGTTTGATGCATAGTGTAGAGAAGAGGATAATCCCCAGATACAGAGTTCTCGGAATTTTGAAGTCTAAGAGACTGTTGAAGAAGGACCCAAGTTTTATTAATTTGGTACACTTGTCTGAGGAGGAGTTCTTGGAGAAGTACATTTCGAGGTTTGGATATAATGCTGAGGAGTTGTTGGTAGCTTACATGGGTGATGTTTCAGATTCATCAGAGGAATGA 1170 0.4735 MIALSSVSSLSRSYNFFCFPSLNLTKFSLFSFSSAASPANTSNSDPFIVDYLIETFGFSKTQAFSLSKRFRNAKGPEKPDSVLHLLRHLGFSETHIRGAVRVTPQILFADVEKTLKPKLGLFQQLGLTGFELGHFVSKNATLLTVSLDRKLIPCIEILKKILSVGGDHRDLIRVLQRCNWIISKDPESRLLPNISFLQSCGIIGSQLAMLLKRQPGLFVKRESNLRDLVRKVEEMGFSADSRMLVHALYTLNCISPETLRRKFKLLWSFGFSEGECMAMFRRTPGLLRTSEEKLRLGIEFLMNTVGIERTALVHQPACLMHSVEKRIIPRYRVLGILKSKRLLKKDPSFINLVHLSEEEFLEKYISRFGYNAEELLVAYMGDVSDSSEE* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01518 389 SMART mt_12 208 238 IPR003690 GO:0003690|GO:0006355
Eupl03g01518 389 SMART mt_12 172 203 IPR003690 GO:0003690|GO:0006355
Eupl03g01518 389 SMART mt_12 309 343 IPR003690 GO:0003690|GO:0006355
Eupl03g01518 389 SMART mt_12 97 128 IPR003690 GO:0003690|GO:0006355
Eupl03g01518 389 SMART mt_12 242 272 IPR003690 GO:0003690|GO:0006355
Eupl03g01518 389 SMART mt_12 277 308 IPR003690 GO:0003690|GO:0006355
Eupl03g01518 389 SMART mt_12 133 164 IPR003690 GO:0003690|GO:0006355
Eupl03g01518 389 PANTHER CGI-12 PROTEIN-RELATED 48 368 IPR003690 GO:0003690|GO:0006355
Eupl03g01518 389 Gene3D Transcription termination factor 3, mitochondrial 165 369 IPR038538 -
Eupl03g01518 389 Gene3D Transcription termination factor 3, mitochondrial 53 164 IPR038538 -
Eupl03g01518 389 FunFam Mitochondrial transcription termination factor-like 147 372 - -
Eupl03g01518 389 Pfam mTERF 165 266 IPR003690 GO:0003690|GO:0006355
Eupl03g01518 389 Pfam mTERF 83 164 IPR003690 GO:0003690|GO:0006355
Eupl03g01518 389 Pfam mTERF 254 361 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01518 Eupl-Chr3 41656624 41660083 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Eupl03g01518 mTERF 1.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01518 K15031 - ming:122076723 460.685