Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01496 ATGGCCAGCAATAAGAAAAAGCAGAGAAAAAACCAGAAAAATAACAAGAGGCGAAAGGTGTCGGAGAAATCAGAGAACAAAACCCCAATCGTATATGATAACGATTCCGACGGCGCCGAATCAGAGTCCGAGAAGATTCAGAAGCTCCTCGAACCCTACACGAAGGACCAGTTGGTCGAATTCATCTGCGACGCCGCCGTAAACGACTCTTCCCTACTCCAACGCATCCAAACCACTGCCGACCGAGACGTCTCGCACCGCAAAGTATTCGTTCACGGTCTCGGCTGGGACACCACCCGCGAAACCCTAATTTCCGCTTTCGAATCCTATGGAGAGATCGAAGACTGCAATGTTGTTATCGATCGAGTCACTGGTAAGGCCAAGGGTTACGGGTTCGTCCTCTTCAAGTCCCGAGCTGGCGCCATAAAAGCCCTAAAGCAGCCGCAGAAGAAGATCAGCAACCGCGTTACGTCGTGTCAATTGGCTTCCATCGGTCCGGTGCCAGCTCAACAGAACCAGGACACAGCGGGGCGGAAGATTTATGTCAGTAATGTCCACGCTGATGCGGACCCAGAGAAGCTTCGCGCGTTCTTCGAGAAATTCGGAGAGATTGAGACGGGGCCGTTGGGGTTTGATTTGTTTACTGGGAAATCACGAGGGTTCTCTCTCTTTGTGTATAAGACGCAAGAGGGAGTTAAGAAGGTACTTGAAGAGCCCTACAAGATGTTCGAGGGGCATCAGTTGCATTGCCAGAGGGCGACTGAGAACAAGAACAAGCCTACTGTGCAGCAGCCTGTGCAGGCCCCTGTCTTGGCTGCTGTTGCAGCTGCGCAGAATTTGGCCCTCTTTGGTCATCATCCTAGTCTCAATCCTGTTTATAGTGGGTTGCTTGCAAATCCGAATCCCGGAATGACTGCAAATCCAAATTCCGGGATGATTCCGGGCTCTGTCAATCCGTTGATGGCGGGGGCGTTGAACCCGGGTGTGATTACTCAAGTCGCAGGGAGTTCGATTGGGGGTACACCGGGGTTTGGGGTATACAGTGCGTCGCACGGGTTGGGTAATTTAGGGGCTAGTTCTTCTGTGCTTGGGGCATATCCGTCTTTGCAAGGGCTGCAATCTTATCAGAATGCACACCAAGGGCTGCAATCTTATCAGAATTCACACCTGGGGCAGTCATCTTCAGCAAGGACTCATGGGACGGGTGGGTCTTTGACTGGTTATCCATCTTACATGTGA 1239 0.5174 MASNKKKQRKNQKNNKRRKVSEKSENKTPIVYDNDSDGAESESEKIQKLLEPYTKDQLVEFICDAAVNDSSLLQRIQTTADRDVSHRKVFVHGLGWDTTRETLISAFESYGEIEDCNVVIDRVTGKAKGYGFVLFKSRAGAIKALKQPQKKISNRVTSCQLASIGPVPAQQNQDTAGRKIYVSNVHADADPEKLRAFFEKFGEIETGPLGFDLFTGKSRGFSLFVYKTQEGVKKVLEEPYKMFEGHQLHCQRATENKNKPTVQQPVQAPVLAAVAAAQNLALFGHHPSLNPVYSGLLANPNPGMTANPNSGMIPGSVNPLMAGALNPGVITQVAGSSIGGTPGFGVYSASHGLGNLGASSSVLGAYPSLQGLQSYQNAHQGLQSYQNSHLGQSSSARTHGTGGSLTGYPSYM* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01496 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 187 IPR000504 GO:0003723
Eupl03g01496 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 155 IPR000504 GO:0003723
Eupl03g01496 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 180 249 IPR000504 GO:0003723
Eupl03g01496 412 MobiDBLite consensus disorder prediction 1 17 - -
Eupl03g01496 412 Gene3D - 1 167 IPR012677 -
Eupl03g01496 412 SMART rrm1_1 88 160 IPR000504 GO:0003723
Eupl03g01496 412 SMART rrm1_1 179 251 IPR000504 GO:0003723
Eupl03g01496 412 Gene3D - 168 263 IPR012677 -
Eupl03g01496 412 MobiDBLite consensus disorder prediction 385 412 - -
Eupl03g01496 412 MobiDBLite consensus disorder prediction 1 44 - -
Eupl03g01496 412 SUPERFAMILY RNA-binding domain, RBD 168 263 IPR035979 GO:0003676
Eupl03g01496 412 PANTHER GEO13361P1-RELATED 78 341 - -
Eupl03g01496 412 SUPERFAMILY RNA-binding domain, RBD 86 168 IPR035979 GO:0003676
Eupl03g01496 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 178 255 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01496 Eupl-Chr3 41282575 41287440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01496 164 319 C2H2 Transcription Factor Family AT2G19380 25.871 1.17e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01496 K12741 - nnu:104600050 547.354