Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01495 ATGGCGGATCACTCCAGTACTTCTCCTCTCGTTGCTCCTTCTTCGATCACCGAACCAGACGACATCGACCTCGAAGCAGGACCCGGCGAACAAATCCAGTGCAGAATTTGTCTTGAAACCGATGGCAGGGATTTTATTGCTCCTTGCAAGTGCAAAGGAACCTCGAAGTACGTTCACCGCGCATGTTTGGATCATTGGCGGGCCGTAAGGGAAGGGTTTGCATTTGCTCATTGCACAACTTGCAAGGCCCCTTACCATTTGAGAGTGCACGTTCTTGCAGATAGGAAATGGCGAACTTTGAAGTTCCGTTTCTTTGTGACTAGAGATATAATATTTATTTTTGTGGCTGTTCAACTTGTTATCGCTTCATTGGCATATTTAGTGTATCTAATTGATGGTTACCAGCAATTCTGGCTTCGCTTGGCCTGGGGCTTCGATAGTGAACTTAGTTTCTACTACTTATGTGGAGCACTACTGTTTTTTGCTTTGCTGGGATTGTCTGGGTGCTTCATAACTTGTTATGATCGAAGAGTGCGCAATGATCTCACTCAGCCATGTCGAGAATTATGTCTTTGTTGCTGCCAGCCTGGAATGTGTGCAGACTGCCATTTACCTGGCACTCTCTGTATGTGGACTGATTGTACCACATGCTTCGAGAGTTGTGCAAGTACTGCTGGTGAATGTGGTTGCTTAGGAGGCGCTGGCGAAGCAGGGTTGCCATTACTGTTTATCATGGGCTTGATCATGCTGGGCCTATTTACTGTGATTGGCATATTCTACAGCGTCCTTGTGGCTACAATGGTTGGGCAACGGATTTGGCAGCGGCATTATCACATACTTGCAAAAAGGATGCTAACAAAAGTCAGGGTTTCTTCGAATCATTTTTTTTCTTCTATACTACTGTAG 906 0.457 MADHSSTSPLVAPSSITEPDDIDLEAGPGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRACLDHWRAVREGFAFAHCTTCKAPYHLRVHVLADRKWRTLKFRFFVTRDIIFIFVAVQLVIASLAYLVYLIDGYQQFWLRLAWGFDSELSFYYLCGALLFFALLGLSGCFITCYDRRVRNDLTQPCRELCLCCCQPGMCADCHLPGTLCMWTDCTTCFESCASTAGECGCLGGAGEAGLPLLFIMGLIMLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKVRVSSNHFFSSILL* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01495 301 CDD RING_CH-C4HC3_MARCH 34 82 - -
Eupl03g01495 301 ProSiteProfiles Zinc finger RING-CH-type profile. 26 88 IPR011016 GO:0008270
Eupl03g01495 301 SMART ringv_2 33 82 IPR011016 GO:0008270
Eupl03g01495 301 Pfam RING-variant domain 34 81 IPR011016 GO:0008270
Eupl03g01495 301 SUPERFAMILY RING/U-box 30 86 - -
Eupl03g01495 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 95 IPR013083 -
Eupl03g01495 301 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 18 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01495 Eupl-Chr3 41270978 41280282 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01495 1 293 C3H Transcription Factor Family AT2G22120 82.034 6.25e-174 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01495 - - mof:131160524 546.969