Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01492 ATGGGTTCTCTGTCAGAATTCTTCTCTAATCTCTACACAATCACCATAATCTTCTTCTCTTTGTTACTTCTTGAAGCAATGATCTTGATCCGATCTGTTGCGAGGGCAACGTGGCGGTCTCACAAGCGTCCGATCGGGACAATTAGGTATCTGGCGTTGATTGAAGAAAAACACCCGGCAATGCGTTACAGGGAGGGATCGAGGCCGGAGTTGACCGAGTGTGCTGTGTGTTTATCGAAAATTGAGGAAGGAGAAGAGATCAGGGAGTTGCTTTGCAGGCATGTGTTCCACAAGGACTGCGTTGACAGGTGGCTTGAACACGATTGGGCCACATGTCCCTTATGTCGAAGGTCTGTGTTGCCTGAAGAGATTGTGATCAAACACCGTCGATTACAAAGCGAGCAGGAGAACGACGGGGATGAGGAGCTGGTTTTCTTGTTGTCTGCCTTACACGGTAGTAATTTACACAGATTGTTGTAG 480 0.4771 MGSLSEFFSNLYTITIIFFSLLLLEAMILIRSVARATWRSHKRPIGTIRYLALIEEKHPAMRYREGSRPELTECAVCLSKIEEGEEIRELLCRHVFHKDCVDRWLEHDWATCPLCRRSVLPEEIVIKHRRLQSEQENDGDEELVFLLSALHGSNLHRLL* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01492 159 SUPERFAMILY RING/U-box 55 121 - -
Eupl03g01492 159 ProSiteProfiles Zinc finger RING-type profile. 74 116 IPR001841 -
Eupl03g01492 159 Pfam Ring finger domain 73 116 IPR001841 -
Eupl03g01492 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 121 IPR013083 -
Eupl03g01492 159 PANTHER - 1 158 - -
Eupl03g01492 159 SMART ring_2 74 115 IPR001841 -
Eupl03g01492 159 CDD RING-H2_PA-TM-RING 73 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01492 Eupl-Chr3 41248403 41249165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01492 72 130 C3H Transcription Factor Family AT1G15100 52.542 5.35e-18 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01492 K16282 - tcc:18611643 199.904