Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01473 ATGGGTTTGAGGGACCGTGGTAATATGGAGGATCCAGATGGGACATTAGCAAGTGTTGCCCAATGCATTGAGCAGTTGCGCATGCGTTCCTCAACTGTACAAGACAAAGAGAGCTCATTGAAGCAGTTGCTGGACCTAATTGACACACGTGAAAATGCTTTCAGTGCTGTTGGATCTCACTCTCAGGCTGTTCCAATACTTGTTTCTCTTCTCAGATCAGGATCACTTGGAGAGAAGATGCAGGCTGCTACAGTTTTAGGTTCTCTCTGCAAGGAGGATGAACTAAGGGTAAAAGTCTTGCTGGGGGGTTGCATTCCACCTTTGCTTGGCCTTCTCAGGTCCAGCTCAGCAGAAGGCCAAATTGCAGCCGCAAAGGCTATATATGCTGTTTCTCAAGGTGGGGCCAAGGATCATGTCGGATCAAAGATCTTTTCAACTGAAGGAGTTGTACCTGTGCTTTGGGAGCAGCTAGAACTTGGGCTCAAGGCTGGAAACTTGGTTGATAACCTGTTAACTGGAGCTTTGAGAAACCTGTCCAGCAGCACTGAAGGATTTTGGTTTGCAACGCTAGAAGCAGGAGGATTGGATATACTTTTGAAGTTGCTCACAACTGGACAGTCAAGTACTCAAGCAAATGTTTGCTTTCTTCTTGCATGTATGATGATGGTGGATGCATCTGTTTGTTCTAGGATCTTAGCTGCAGAAGCTACTAAACTACTCCTCAAGTTACTGGGACCTGGTAATGAAGCTTCTGTTAGGGCAGAAGCTACAGGTGCTCTTAAATCACTTTCTGCTCAGTGCAAGGAAGCAAGGCGGGAGATAGCTAGTTCTAATGGGATACCTGCTTTGATAAATGCTACAATAGCTCCATCGAAAGAATTCATGCAAGGTGAGTATGCCCAAGCATTGCAGGAGAATGCAATGTGTGCTCTGGCGAATATCTCTGGTGGTTTGCCATACGTCATCTCAAGCCTTGGTGAAAGCCTTGACTCGTGCACTTCACCTGCGCAGATTGCTGACACAATGGGGGCTTTAGCTTCAGCTCTTATGATATATGATGCCAATGCAGAATCTATCAGAGCAACAGACCCCCTGATTATTGAGCAGATATTGGTTAAGCAGTTGAAATCTCGGTTACCATTCCTTGTGCAGGAACGCACCATAGAAGCCCTAGCCAGCTTGTATGGGAATGCTATCCTTACTAAGCAGCTTGCAAATTCTGAAGCAAAACGTCTTATTGTTGGTTTAATCACAATGGCAACCAATGAGGTTCAGGATGAGCTGATAAGATCCCTTCTCATACTTTGCAACAATGAAAGAAGTCTGTGGCGTGCACTCCAAAGTCGGGAGGGGGTTCAGCTGTTAATATCTCTTCTAGGACTGTCATCAGAGCAACAGCAGGAATGTGGAGTCGCTCTGCTTTGCCTTTTATCTAACGAGAATGATGAGAGTAAGTGGGCTATCACTGCTGCTGGAGGCATACCCCCACTTGTTCAAATTCTAGAGACGGGATCTGCAAAAGCCAAGGAAGACTCTGCCACGATCCTTGGAAACCTCTGTAACCACAGTGAAGATATACGAGCATGTGTTGAAAGTGCTGATGCTGTTCCTGCTCTATTATGGCTACTGAAGAATGGAAGCCAGAATGGAAAAGAGATCGCAGCAAAGACTTTGAACCATCTTATCCACAAATCAGATACAGGGACAATCAGCCAACTCACTTCCTTATTAACCAGTGATCTACCTGAATCTAAAATTTATGTTTTGGATGCAATGAAAAGTTTGCTTTCTGTGGCTCCCCTAAAGGATATATTGCATGAAGGTAGTGCTGCGAACGATGCGATTGAGACAATGATTAAAATTTTGAGTTCTACAAGGGAAGAGACTCAAGCTAAGTCTGCATCAGTTCTAGCTGGACTCTTTGATCTCCGAAAGGACTTGCGTGAAAGTAACATTGCTGTTAAGACACTTTGGTCTGCCATGAGGCTGCTAAATGTGGATTCCGAAAAGATCTTAATGGAATCCTCATGCTGCCTTGCAGCTATTTTTTTGTCAATTAAACAAAACCGGGATGTTGCTGCCGTTGCTAGAGATGCATTGGCTCCATTAGTTGTGCTTGCAAAGTCTTCAGTTCTAGAAGTTGCAGAACAGGCAACACGAGCTTTGGCTAATCTTCTTTTGGACAAGGAAGTTTTGGAAGAAGCATTTCCTGAAGAAATTATTTTGCCCGTTACAAGGGTGCTGCGTGAAGGAACAGTTGATGGAAGAACCCATGCCGCTGCAGCAATTGCTCGCCTTCTCCAATGTCGCGCAAATGATTATGCACTTTCTGATTGTGTGAATCGTGCTGGAACAGTGCTCGCATTAATTTCTCTTCTAGAATCTGCTAGCATTGAATCTTCTGCCTCATCAGAAGCACTTGATGCACTTGCTTTGTTGTCAAGGTCCAACGGAATAAGTGGGCATACCAAACCTGCATGGGCAGTCCTAGCTGAATTTCCCCACACCATAGCCCCGATAGTTTCATGTATATCTGACGCAACACCCTTGTTGCAGGACAAAGCTATCGAAATTTTGTTGAGGCTTTGCCGAGATCAGCCTGTTGTCCTGGGAAATACAATTGGTAGCACTTCTGGGTGTATTTCATCAATTGCAAGAAGGGTGATTAGTTCCAAAAACACCAAAGTGAGAGTTGGAGGAACTGCACTTCTGATTTGTGCTGCCAAAGTGCATCAGCAGAGAGTGGTAGAAGCTCTGAATGAATCAAACTCATGCACCTATCTCATTCAATCTCTTGTGGAAATGCTCATTTTGGCGCAATCATCTTCGGCTATGGACCAAGGTGGCAGTGAAAACATGGACATAAGCATTTACAGGCATACAGAACAAACTAGAATTGGTGAAACTGAAAATAGCACGACAGTTATTTCTGGTGACAATGTCTCTATATGGCTACTTTCTGTTCTTGCTTGTCATGATGAAAAAAGTAAAATTGCCATTATGGAAGCTGGAACGGTTGAAGTTCTCACTGACAGGATCTCTCAATGTTTGTTGCAAGCTAATCAGAATGATTCTAAAGAAGATAGCAATACATGGGTTTGTGCTTTACTGCTCGCGATTTTATTTCAAGACAGAGAAATCATACGAGCACATGCAACCATGCAATCTGTTCCTGTCCTATCAAATTTGTTGAAGTCAGAGGAGTCTGCAAACAGATATTTTGCAGCACAAGCACTGGCCAGTCTAGTCTGTAATGGCAGTAGAGGGACTCTTCTGTCTGTTGCAAATTCGGGTGCAGCTGGTGGGCTTATTTCCTTACTTGGCTGTGCTGATGTTGATATACAAGATCTTTTGGAACTGTCAGAGGAATTCACTTTGGTGCGCAATCCAGAACAAGTTGCTCTAGAGAGATTGTTTAGAGTTGATGACATAAGAGTTGGCGCTACTTCTCGGAAAGCAATACCTGTCCTTGTCGATCTACTCAAACCGATTCCAGATCGCCCTGGGGCACCTTTTCTAGCACTTGGACTCCTGACTCAGCTTGCGAAAGACAGTCCCGCAAACAAGATTGTAATGGTAGAAGCAGGGGCTTTAGAGGCACTGACTAAGTATCTTTCACTTGGCCCACAAGATGCAACAGAAGAAGCGGCTACTGTTTTGCTGGGGATCCTATTTGGTAATGCTGAAATACGGAAACATGAGTCTGCATTCGGTGCTGTCAATCAGCTTGTAGCGGTCTTACGTCTAGGTGGAAGAGGAGCTAGGTACAGTGCTGCTAAAGCATTGGAGAGCCTATTTTCCTCAGAACATATCAGGAATGCTGAAACTGCTCGACAAGCTGTTCAACCCCTGGTGGAGATTCTTAACACTGGCTTAGAGAAGGAGCAACATGCTGCTATTGCTGCATTGGTTAAGTTACTGTGTGATACTCCTTCAAGAGTCCTTGCTGTTGCAGATTTTGAAATGAATGCAGTTGATGTTCTCTGTAGGATCCTTTCATCGAATTGTTCAATGGAGCTGAAAGGAGATGCTGCTGAGTTGTGTTGTGTCCTTTTTGGAAATACAAGAATTAGGTCTACAATGGCTGCAGCTCGCTGTGTTGAGCCTCTGGTGTCTCTCCTTGTAACCGAGTTCAGTCCTGCTCAGCACTCAGTGGTTCGTGCACTGGATAAACTACTGGATGATGAGCAATTGGCAGAACTAGTTGCTGCACATGGTGCAGTCATTCCTCTTGTCGGCCTTCTGTTTGGTAGGAATTACACACTTCATGAAGCGATTTCCAGGGCTCTAGTGAAGTTAGGGAAAGACAGGCCTGCTTGTAAGATGGAGATGGTTAAAGCTGGAGTCATCGAGGGCATACTCGAGATCTTCCATGAAGCTCCTGATTTTCTCTGTGGCGTATTTGTGGAACTGCTTCGGATATTGACCAACAATAATAGCATCGCGAAGGGTCCATCTGCCGCCAAAGTGGTTGAGCCCCTTTTTCTGTTGCTAACAAGACCAGAGTTTGGTCCTGATGGACAGCATAGTGCTTTACAGGTTCTAGTTAATATTTTGGAGCATCCCCAGTGTCGTGCTGATTATAGCCTGACCCCTCAGCAAGCTATTGAGCCACTTGTCCCTTTATTGGATTCTTCAACTCCAGCAGTGCAACAACTGGCAGCTGAACTTCTCTCACATCTGCTCTTGGAAGAAAATCTTCAGAAGGACTCAATAACGCAGCAAGTAATTGGTCCCCTTATACGAGTTCTAGGGTCTGGTATACAGATTTTGCAACAGAGAGGTATAAAAGCTCTTGTTAGTATTGCATTAACTTGGCCTAATGAAGTTGCAAAAGATGGTGGTGTCAATGAGCTGTCCAAAGTTATATTGCAAGATGATCCTCCATTGCCTCATGCCTTGTGGGAATCTGCTGCTTCTGTTTTAGCTAGTATTCTGCAGTTTAGTTCTGAATATTATTTGGAGGTACCTGTTGCAGTGGTCGTAAGGTTGCTTCGTTCTGGCTCGGAAAGTACAGTTATTGGAGCATTAAATGCTCTGCTTGTGTTGGAAAGTGATGATGCAACCAGTGCCGAAGCAATGGCTGAAAGTGGTGCGGTAGAGGCACTTTTGGAACTTCTCAGGTGTCATCACTGTGAGGAAACTGCAGCAAGACTGCTGGAAGTGTTGCTAAACAATGTGAAGATCAGAGAAACTAAAGCTGCTAAGTCTGCAATTTCACCATTATCCCAGTACCTTTTGGATCCACAAACCCAAGCTCAGCAGGCAAGGTTGCTAGCAACTCTAGCTCTTGGTGATCTATTCCAGAATGAGGGCCTAGCTCGAACTACAGATGCTGTTTCAGCTTGTCGAGCTCTAGTAAATCTGCTTGAAGACCAACCTGCCGAAGAAATGAAAGTGGTAGCTATATGTGCCTTGCAAAACCTGGTAATGTACAGCCGATCAAATAAAAGGGCAGTTGCAGAAGCTGGTGGTGTTCAGGTTTTACTGGACCTGATCTGTTCAAGTGATCCGGATACCTCAGTTCAGGCAGCAATGTTTATTAAACTTCTCTTCTCTAATCATACTATTCAAGAGTACGCTTCTAGCGAAACAGTGAGAGCTATAACCGCGGCTATTGAAAAGGATCTATGGGCTACCGGAAGCGTGAATGAGGAGTATCTGAAAGCCTTAAATGCACTCCTTGGCAACTTCCCACGTTTGAGAGCGACTGAGCCTGCAACACTCACTATTCCCCATCTGGTCACATTGCTCAAGACTGGCTCAGAGGCAACTCAAGAAGCTGTGTTGGATTCACTTTTCCTTCTTAGGCAAGCTTGGTCGGCATGCCCTGCCGAAGTCTTCAAAGTTCAGTCAGTTGCTGCTGCAGAGGGAATTCCGTTGCTGCAATACTTGATCCAGTCTGGCCCACCTCGATTTCAGGAGAAGGCAGAACTTCTTTTGCAGTGTTTACCGGGGACTTTAATGGTAATTATCAAGTGTGGCAACAATTTGAAGCAATCAGTTGGAAACCCTAGTGTCTACTGTAAGATCACACTCGGCAATACACCACCTAGGCAGACCAAGGTTGTGTCGACCGGTCCTACTCCTGAGTGGGATGAGGGCTTCGCATGGGCATTTGATAGTCCTCCGAAAGGTCAGAAGCTTCACATCTCCTGCAAGAATAAGAGCAAATTTGGGAAGAGCTCATTTGGAAAAGTAACGATCCAGATTGACCGGGTTGTAATGCTCGGTGCAGTTGCTGGGGAGTATACTTTGTTGCCCGAAAGCAAAAGTGGGCCTTCTCGAAATCTGGAAATCGAATTCCAGTGGTCCAACAAATAA 6324 0.4497 MGLRDRGNMEDPDGTLASVAQCIEQLRMRSSTVQDKESSLKQLLDLIDTRENAFSAVGSHSQAVPILVSLLRSGSLGEKMQAATVLGSLCKEDELRVKVLLGGCIPPLLGLLRSSSAEGQIAAAKAIYAVSQGGAKDHVGSKIFSTEGVVPVLWEQLELGLKAGNLVDNLLTGALRNLSSSTEGFWFATLEAGGLDILLKLLTTGQSSTQANVCFLLACMMMVDASVCSRILAAEATKLLLKLLGPGNEASVRAEATGALKSLSAQCKEARREIASSNGIPALINATIAPSKEFMQGEYAQALQENAMCALANISGGLPYVISSLGESLDSCTSPAQIADTMGALASALMIYDANAESIRATDPLIIEQILVKQLKSRLPFLVQERTIEALASLYGNAILTKQLANSEAKRLIVGLITMATNEVQDELIRSLLILCNNERSLWRALQSREGVQLLISLLGLSSEQQQECGVALLCLLSNENDESKWAITAAGGIPPLVQILETGSAKAKEDSATILGNLCNHSEDIRACVESADAVPALLWLLKNGSQNGKEIAAKTLNHLIHKSDTGTISQLTSLLTSDLPESKIYVLDAMKSLLSVAPLKDILHEGSAANDAIETMIKILSSTREETQAKSASVLAGLFDLRKDLRESNIAVKTLWSAMRLLNVDSEKILMESSCCLAAIFLSIKQNRDVAAVARDALAPLVVLAKSSVLEVAEQATRALANLLLDKEVLEEAFPEEIILPVTRVLREGTVDGRTHAAAAIARLLQCRANDYALSDCVNRAGTVLALISLLESASIESSASSEALDALALLSRSNGISGHTKPAWAVLAEFPHTIAPIVSCISDATPLLQDKAIEILLRLCRDQPVVLGNTIGSTSGCISSIARRVISSKNTKVRVGGTALLICAAKVHQQRVVEALNESNSCTYLIQSLVEMLILAQSSSAMDQGGSENMDISIYRHTEQTRIGETENSTTVISGDNVSIWLLSVLACHDEKSKIAIMEAGTVEVLTDRISQCLLQANQNDSKEDSNTWVCALLLAILFQDREIIRAHATMQSVPVLSNLLKSEESANRYFAAQALASLVCNGSRGTLLSVANSGAAGGLISLLGCADVDIQDLLELSEEFTLVRNPEQVALERLFRVDDIRVGATSRKAIPVLVDLLKPIPDRPGAPFLALGLLTQLAKDSPANKIVMVEAGALEALTKYLSLGPQDATEEAATVLLGILFGNAEIRKHESAFGAVNQLVAVLRLGGRGARYSAAKALESLFSSEHIRNAETARQAVQPLVEILNTGLEKEQHAAIAALVKLLCDTPSRVLAVADFEMNAVDVLCRILSSNCSMELKGDAAELCCVLFGNTRIRSTMAAARCVEPLVSLLVTEFSPAQHSVVRALDKLLDDEQLAELVAAHGAVIPLVGLLFGRNYTLHEAISRALVKLGKDRPACKMEMVKAGVIEGILEIFHEAPDFLCGVFVELLRILTNNNSIAKGPSAAKVVEPLFLLLTRPEFGPDGQHSALQVLVNILEHPQCRADYSLTPQQAIEPLVPLLDSSTPAVQQLAAELLSHLLLEENLQKDSITQQVIGPLIRVLGSGIQILQQRGIKALVSIALTWPNEVAKDGGVNELSKVILQDDPPLPHALWESAASVLASILQFSSEYYLEVPVAVVVRLLRSGSESTVIGALNALLVLESDDATSAEAMAESGAVEALLELLRCHHCEETAARLLEVLLNNVKIRETKAAKSAISPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLARTTDAVSACRALVNLLEDQPAEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVLLDLICSSDPDTSVQAAMFIKLLFSNHTIQEYASSETVRAITAAIEKDLWATGSVNEEYLKALNALLGNFPRLRATEPATLTIPHLVTLLKTGSEATQEAVLDSLFLLRQAWSACPAEVFKVQSVAAAEGIPLLQYLIQSGPPRFQEKAELLLQCLPGTLMVIIKCGNNLKQSVGNPSVYCKITLGNTPPRQTKVVSTGPTPEWDEGFAWAFDSPPKGQKLHISCKNKSKFGKSSFGKVTIQIDRVVMLGAVAGEYTLLPESKSGPSRNLEIEFQWSNK* 2108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01473 2107 SUPERFAMILY ARM repeat 26 335 IPR016024 -
Eupl03g01473 2107 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 2 2107 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Eupl03g01473 2107 CDD C2 1988 2078 - -
Eupl03g01473 2107 SUPERFAMILY ARM repeat 299 641 IPR016024 -
Eupl03g01473 2107 Gene3D - 774 1135 IPR011989 -
Eupl03g01473 2107 SUPERFAMILY ARM repeat 615 930 IPR016024 -
Eupl03g01473 2107 Coils Coil 715 735 - -
Eupl03g01473 2107 Gene3D C2 domain 1986 2107 IPR035892 -
Eupl03g01473 2107 Coils Coil 253 273 - -
Eupl03g01473 2107 Pfam C2 domain 1986 2077 IPR000008 -
Eupl03g01473 2107 SMART arm_5 1813 1853 IPR000225 GO:0005515
Eupl03g01473 2107 SMART arm_5 1524 1563 IPR000225 GO:0005515
Eupl03g01473 2107 SMART arm_5 92 132 IPR000225 GO:0005515
Eupl03g01473 2107 SMART arm_5 1687 1725 IPR000225 GO:0005515
Eupl03g01473 2107 SMART arm_5 689 727 IPR000225 GO:0005515
Eupl03g01473 2107 SMART arm_5 1185 1225 IPR000225 GO:0005515
Eupl03g01473 2107 SMART arm_5 49 91 IPR000225 GO:0005515
Eupl03g01473 2107 SMART arm_5 481 521 IPR000225 GO:0005515
Eupl03g01473 2107 SMART arm_5 1395 1435 IPR000225 GO:0005515
Eupl03g01473 2107 SMART arm_5 1354 1394 IPR000225 GO:0005515
Eupl03g01473 2107 SMART arm_5 267 316 IPR000225 GO:0005515
Eupl03g01473 2107 SMART arm_5 523 563 IPR000225 GO:0005515
Eupl03g01473 2107 SMART arm_5 772 815 IPR000225 GO:0005515
Eupl03g01473 2107 SMART arm_5 224 265 IPR000225 GO:0005515
Eupl03g01473 2107 SMART arm_5 1140 1183 IPR000225 GO:0005515
Eupl03g01473 2107 SMART arm_5 1770 1811 IPR000225 GO:0005515
Eupl03g01473 2107 Gene3D - 601 773 IPR011989 -
Eupl03g01473 2107 Gene3D - 9 364 IPR011989 -
Eupl03g01473 2107 Gene3D - 365 597 IPR011989 -
Eupl03g01473 2107 Gene3D - 1136 1338 IPR011989 -
Eupl03g01473 2107 ProSiteProfiles C2 domain profile. 1967 2084 IPR000008 -
Eupl03g01473 2107 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1336 1570 - -
Eupl03g01473 2107 SUPERFAMILY ARM repeat 1144 1521 IPR016024 -
Eupl03g01473 2107 Pfam Armadillo/beta-catenin-like repeat 481 520 IPR000225 GO:0005515
Eupl03g01473 2107 SUPERFAMILY ARM repeat 982 1116 IPR016024 -
Eupl03g01473 2107 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1985 2104 IPR035892 -
Eupl03g01473 2107 SUPERFAMILY ARM repeat 1564 1984 IPR016024 -
Eupl03g01473 2107 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1986 2107 - -
Eupl03g01473 2107 Gene3D - 1573 1985 IPR011989 -
Eupl03g01473 2107 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1152 1196 IPR000225 GO:0005515
Eupl03g01473 2107 SMART C2_3c 1987 2083 IPR000008 -
Eupl03g01473 2107 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 492 534 IPR000225 GO:0005515
Eupl03g01473 2107 Gene3D - 1339 1572 IPR011989 -
Eupl03g01473 2107 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1781 1824 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01473 Eupl-Chr3 40959863 40983924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01473 404 561 U-box Gene Family AT3G46510 30.500 1.70e-10 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01473 - - nnu:104600075 3502.61