Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01469 ATGGGTCGTGTTAAACTCCAGATAAAGAGAATAGAAAACAATACAAATCGACAGGTTACATTTTCAAAACGCAGAAATGGACTTATTAAGAAGGCTTATGAGCTGTCTATCCTTTGCGACATTGATATTGCTCTTATCATGTTCTCTCCCTCCGGACGTCTTAGTCACTTCTCTGGCAAGCGAAGGATTGAGGACGTGCTTACTCGTTACATAAGTCTCTTGGATCATGATAGAGGTGCTGTTCAAAATCGAGAGTATTTGATAAGGACCCTAAAGAAACTCAGGAGTGAAAGTGATATTGCTCTTCAATTAGCCAAGAACTCCAACAAGAAATCACTAGGTTTCAACAGCAAATTCAAATGGCCCAAGAACAGCTAA 378 0.3968 MGRVKLQIKRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFSGKRRIEDVLTRYISLLDHDRGAVQNREYLIRTLKKLRSESDIALQLAKNSNKKSLGFNSKFKWPKNS* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01469 125 CDD MADS_MEF2_like 2 70 IPR033896 GO:0000977|GO:0045944
Eupl03g01469 125 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Eupl03g01469 125 FunFam MADS-box transcription factor 41 13 91 - -
Eupl03g01469 125 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Eupl03g01469 125 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 102 - -
Eupl03g01469 125 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Eupl03g01469 125 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Eupl03g01469 125 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Eupl03g01469 125 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Eupl03g01469 125 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Eupl03g01469 125 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Eupl03g01469 125 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01469 Eupl-Chr3 40923398 40924350 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01469 1 113 Type I MADS-box Gene Family AT1G77980 65.891 4.42e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Eupl03g01469 SRF-TF 1.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01469 - - nnu:104605862 192.586