Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01467 ATGGTTCGGAAGATCGAGGTGAAGTTGTTAGAAGAAGAGGTTAGTCGTCAAGCCACCTTTGCTAAGCGTAGAAATGGTCTCATTAAAAAGGCTTTCGAGACCTGTGTGTTATGTGATGTAGATGTAGCTTTTATAGCTTTCTCTCCGACTGGTCGTCTTAATCACTTTTCCGGCAATAAGAGTCCTATAGAGGAACCAGAGACCGAGTTGCTTGAACTTGAAGAATCAGACTCCTCATCACCTAAGCAGTCCATTAATGCTCCGACGGTGTTAGTGGAACAAGAAGAAGGATTGTCCTCATTTGAACTTGAGGAAGCAAATTCATTCTCTCAAAATCAATTGAATTCAAAAGAGAATTTAGTCTCTTCCAGGCGTCCATCATCAACTGGATTTTCCAATATACTCGAACAAGCTACGGAATTGCCTGCCGAGCAACATGGAAACGAAGTCATGCCTCTCCACATTGATATGCATCTCAGCAGCGACTACAATCTCCTGATATCAAACTTGCCGCCAGAGTTTCGGACTGCTCCACCCGCTGTTTATGATCCTGTTTATGAAGGGTTAGGGTTACATGTTGATCCACACTTACGGTTGTTCCTCGCCAAAAACGAGCGTGGTCACTTGAAACTATTGTCGTGGTTACCCAACAGTAAATGGTCCAACCAAACAAGCGAGTTAAGAGCGGGCATGAGTGAGGCAATCATATATCCATGTCAATCTTAG 726 0.4366 MVRKIEVKLLEEEVSRQATFAKRRNGLIKKAFETCVLCDVDVAFIAFSPTGRLNHFSGNKSPIEEPETELLELEESDSSSPKQSINAPTVLVEQEEGLSSFELEEANSFSQNQLNSKENLVSSRRPSSTGFSNILEQATELPAEQHGNEVMPLHIDMHLSSDYNLLISNLPPEFRTAPPAVYDPVYEGLGLHVDPHLRLFLAKNERGHLKLLSWLPNSKWSNQTSELRAGMSEAIIYPCQS* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01467 241 MobiDBLite consensus disorder prediction 55 86 - -
Eupl03g01467 241 ProSiteProfiles MADS-box domain profile. 1 60 IPR002100 GO:0003677|GO:0046983
Eupl03g01467 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 135 - -
Eupl03g01467 241 SUPERFAMILY SRF-like 3 60 IPR036879 GO:0003677|GO:0046983
Eupl03g01467 241 Gene3D - 13 78 IPR036879 GO:0003677|GO:0046983
Eupl03g01467 241 PRINTS MADS domain signature 37 58 IPR002100 GO:0003677|GO:0046983
Eupl03g01467 241 PRINTS MADS domain signature 22 37 IPR002100 GO:0003677|GO:0046983
Eupl03g01467 241 PRINTS MADS domain signature 2 22 IPR002100 GO:0003677|GO:0046983
Eupl03g01467 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 56 IPR002100 GO:0003677|GO:0046983
Eupl03g01467 241 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01467 Eupl-Chr3 40899994 40908561 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01467 4 80 Type I MADS-box Gene Family AT1G22130 49.351 2.37e-18 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Eupl03g01467 SRF-TF 2.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01467 - - qlo:115978005 88.5817