Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01466 ATGGGTCGTTGTAAAGTCGACATCAAGAAGATAGAGAACGTCACTAGATGTCAGGTGACATTCTCTAAGCGTAGAAATGGTCTGATTAAAAAGGCCTATGAATTATCTGTCCTCTGTGACGTAGATGTCGTCTTTATCGTTTTCTCCCCTTCCGGTCGCTTTTATCAGTTTCCGAACAAAACGAGGCTTGTGGATGTGCTCATTCGTTATGTCAAGCTACCCGATAACCAGAGAAATTATCATATAGAGAATCACGAGTGCTTGCTTGAATTGCTTGAGCACATAAAGCGTGACAGCGCCGAGGAGAATTTTGACGACGACAAGTTTCGTCTCAAGCAGCAAATTATAAATTCGAGGCTAGAACTACAGAAATCCAAGGCCAAGCTCTCGACTGTCGAGCCAGGGTCTGAACAGGAGTTACAGGTTAGCTCTGTTGCTGAAGTCGAGTGGCGCGAGAAATTCGTGGAAGAACTTTTGAAACGAGTGATGGATAGAAGAGATCAATTGAGCCGTAGCCGCTCCTCACTCCAGCGATCAAATGCTCAGATGGGGATGGATCAACGATCATTGTTCGACAACAGCATAGGGGAACAGAATCAACGGCGACAATTTCATATTAGTAACCAAATTTTGATGCAAGTTGACCCTTGGCTGCAAAATTACAGGTTTCAACGGGATCAGTTTCATGATCAACTTAGTAAAGCATTGGGTTTACCGACTAATCACCGCGTACAAGAGATGGAAAATCCATATCCAATCAGCAACCCCCCAGTTTCAAATCTGCAATCTTGGAATCAGATGGGAAACACATCTCAACTTATGGTACCCCATGGTCCACCCCCATACCAGCCATTTCAGGGAACAATGGGTCAACAACTGCCAAGAGGGACATTTAGCAACTATGGGGGATCAAATTCTTTAATAAGCAATTATGTGCCACCCATGTTTAATAATAACGAGGAAATGAATTGGGTGCCAAATGCTCCTCTCAACTATTATGTATCTCAACCTTCGAATGCTGCACTCCATTATGGCCATAATTTGAATGTGTCGTCCCAACCTTCCAACCCTTCAAGGTTTTCGTCCTCGTCCGTTTATGATCCGAAGTATGAAGGCATGGGTTTACACGTGGATCCTTTCCTACGTGAGTACGACCTGAGTAACAACAGCAACAGCAACAGCAACAGCACCCGCCCCAACAACAGTGCGTCAAACCCACCAATACAGAATCACGAGGACACGTCAAACGAAGAGGGCACGTCATCTGAGCAGCCGGTCTCCCAATCTGAAGACCCTAATCCAGACCCGATCCTACCCGATGACCCTTTCCTTGAGGACGTGATTGGCGAATACATGCAGTGGACCCCAGGAAATCAGGAGGATGCGTCGGTTGATGACGATTCCATCCTGCCGGAGTTTTTGCTGAACTTGGACGATCATGAGAAATCAAATGCGTTGGGCTTCTAA 1467 0.4574 MGRCKVDIKKIENVTRCQVTFSKRRNGLIKKAYELSVLCDVDVVFIVFSPSGRFYQFPNKTRLVDVLIRYVKLPDNQRNYHIENHECLLELLEHIKRDSAEENFDDDKFRLKQQIINSRLELQKSKAKLSTVEPGSEQELQVSSVAEVEWREKFVEELLKRVMDRRDQLSRSRSSLQRSNAQMGMDQRSLFDNSIGEQNQRRQFHISNQILMQVDPWLQNYRFQRDQFHDQLSKALGLPTNHRVQEMENPYPISNPPVSNLQSWNQMGNTSQLMVPHGPPPYQPFQGTMGQQLPRGTFSNYGGSNSLISNYVPPMFNNNEEMNWVPNAPLNYYVSQPSNAALHYGHNLNVSSQPSNPSRFSSSSVYDPKYEGMGLHVDPFLREYDLSNNSNSNSNSTRPNNSASNPPIQNHEDTSNEEGTSSEQPVSQSEDPNPDPILPDDPFLEDVIGEYMQWTPGNQEDASVDDDSILPEFLLNLDDHEKSNALGF* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01466 488 MobiDBLite consensus disorder prediction 345 365 - -
Eupl03g01466 488 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Eupl03g01466 488 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Eupl03g01466 488 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Eupl03g01466 488 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Eupl03g01466 488 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Eupl03g01466 488 MobiDBLite consensus disorder prediction 384 466 - -
Eupl03g01466 488 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Eupl03g01466 488 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 249 - -
Eupl03g01466 488 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Eupl03g01466 488 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
Eupl03g01466 488 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Eupl03g01466 488 MobiDBLite consensus disorder prediction 384 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01466 Eupl-Chr3 40892009 40897101 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01466 1 182 Type I MADS-box Gene Family AT1G22130 39.801 5.65e-35 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Eupl03g01466 SRF-TF 2.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01466 - - ming:122074703 191.045