Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01420 ATGTCTAGTGAAATGGCGGAATATTCACCCCAGAAGAAGTCAGGTTGTGGTCTTCTGGCCTTATACAATGGAATTTTCCGTCGTCGGTGCTTATCGCCAAGGAGAACAGGCTCTTCAAGCTCAATTCCCAGATACAACAACAAAGTTCTCAAGCTTCCCATCACCAATTCAAAGCGGAGACGAGGTGGCTCCGATGAGACTGCCTTCCTTCAAACCTCCAATTTAGCAGAACCTCCTCCAAAACTATCAGAGAAAGCCTTCACGAAAGCTACCTTGAATCATCCCCAAACCCCAGTTTCCAATTCCACTGGAACTACGACCACCTCATCATCCTCAAACGGTTCCATCATAACAAAGGTGGCACCAACCCAAAGCCCAGGCCCAGTCCAAGGGAGAAGGGTACCCAAAGAAACCATTGGCATTGCCGGCGAGCTTGATAGCATGATCACCGATCACCAGCGATCAAAAGGATGTGGTAACCTTGTTCGAGCTTCTTCAAGCAATGTAATGCTGTTTGGTAACTTGGGTAACCTAAGGCATCCAGGAGCCGGGAATTCAAATCCAAGCAACCTTTCCAACACCTCCACCAATGTCCTTGATTATCTCCCTAGGACAGCACGAGAGACGGTTTCCACTCCCAATAGCAAGTACTGTAACGGTAATCTTAACGGTAATATGGGCAATATAGTTAGGAATAAGGGTAATGAGAAGGAGACGACCCATCAACCCATCGAACAGTCTGGGTCCTTATGTCGAGCTCTATCGACTAGATTGGATCCTGAGCAATTGAAGGTGATGGGTAATGAGGAGTACAAGAAGGGCAGGTTCACCGAGGCCTTGGCTTTCTATGATCGAGCAATCGCGCTCGACCCAGATAAGGCATCATATCGGAGCAACAAGGCCGCTGCATTAACGGGTCTGGGTCGGCTTCTTGACGCAGTGTTCGAGTGCAGAGAAGCCATTAGGATTGAACCTTCTTATCACAGAGCTCATCACCGGTTGGCAACCTTATATCTCAGATTGGGAGAAGCAGAGAAAGCCTTGTATCACTTGAAACGGTCAGGACCCGAAGCCAAACCCAACGAGATTTCTGAAGCTCAGGCTCTTCAAACCCATCTTAAAAAGTGCACTGAAGCAAAAAAGCTAAGGGATTGGCACACAATGCTAAAAGAGACCGGGTGCGCAATATCCTCCGGTGCAGATTCGTCTCCACAGATGTTCTCTTTGCAAGCCGAGGCCTTGTTGAAGCTCCATCGGCATCAAGAGGCAGAGACCACCTTGACGAACGGACCGGATTTCGACGTCCACGTTTGTACTAAGTTCTTCGGCCCTGTTGGCAATGCTTATCTTTTACTAATACGGGCGCAGGTCGACATGGCTGCCGGCAGGTTTGATGAAGCGGTGGTGGCAGCTCAGCAAGCGGTTCGACTCGACTCCAACAACAAGGAAGTGAGTGGGTTAGTGAAGAGGGCTCGAGCCGTAGCATTAGCTCGATCAAAAGGTAACGAGCTCTTCAAGGCTTCCAAGTTTCCAGAGGCTTGCATAGCATACGGCGAAGGACTCGAGCACGACCGGCTCAACTCGATCTTGCTATGCAATCGAGCCGCTTGTCGATATAAACTGAGACATTTTGAGAAAGCCGTCGAAGATTGTACCAACGCTCTTAACGTACGCCCATCCTACAGCAAAGCTAGACTAAGGAGAGCTGACTGCAACGCCAAGTTGGAACGCTGGGAGGCTTCAATACAAGATTACGAGATGTTGATGAGGGAAACTCCGGGTGATGAAGAGGTGGGCCGGGCCTTGTTCGAGGCCCAGGTCCAGCTCAAGAAGCGACGAGGTGAAGATGTTAAGGACATGAAGTTCGGTGCTGACGTGGTCGTCATCTCCAGCAACGAGCGTTTCAGACACTTCGTAACGTCGCCTGGGATGTCCGTGGCGCTGTTCTGCAACAAAGCGAACGATAAGCAAGCATTGCAACTCATGGAGCAACTCAGCCAAAGATACCCATCCGTCAACTTCCTTAAGGTGGAGGTTGAAGACCACCCCTACCTAGCAAAGTCAGAGGGGGTGAGTATAATGCCAGCCTTCAAGATATACAAGAATGGATCAAGGGTCAAAGAGATTCCAGGCAACAACCACGAATTGTTAGAGAGCTCCGTCAAGTTTTACAGCACTTGA 2181 0.4956 MSSEMAEYSPQKKSGCGLLALYNGIFRRRCLSPRRTGSSSSIPRYNNKVLKLPITNSKRRRGGSDETAFLQTSNLAEPPPKLSEKAFTKATLNHPQTPVSNSTGTTTTSSSSNGSIITKVAPTQSPGPVQGRRVPKETIGIAGELDSMITDHQRSKGCGNLVRASSSNVMLFGNLGNLRHPGAGNSNPSNLSNTSTNVLDYLPRTARETVSTPNSKYCNGNLNGNMGNIVRNKGNEKETTHQPIEQSGSLCRALSTRLDPEQLKVMGNEEYKKGRFTEALAFYDRAIALDPDKASYRSNKAAALTGLGRLLDAVFECREAIRIEPSYHRAHHRLATLYLRLGEAEKALYHLKRSGPEAKPNEISEAQALQTHLKKCTEAKKLRDWHTMLKETGCAISSGADSSPQMFSLQAEALLKLHRHQEAETTLTNGPDFDVHVCTKFFGPVGNAYLLLIRAQVDMAAGRFDEAVVAAQQAVRLDSNNKEVSGLVKRARAVALARSKGNELFKASKFPEACIAYGEGLEHDRLNSILLCNRAACRYKLRHFEKAVEDCTNALNVRPSYSKARLRRADCNAKLERWEASIQDYEMLMRETPGDEEVGRALFEAQVQLKKRRGEDVKDMKFGADVVVISSNERFRHFVTSPGMSVALFCNKANDKQALQLMEQLSQRYPSVNFLKVEVEDHPYLAKSEGVSIMPAFKIYKNGSRVKEIPGNNHELLESSVKFYST* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01420 726 MobiDBLite consensus disorder prediction 53 133 - -
Eupl03g01420 726 Coils Coil 568 588 - -
Eupl03g01420 726 MobiDBLite consensus disorder prediction 89 125 - -
Eupl03g01420 726 Pfam TPR repeat 267 307 - -
Eupl03g01420 726 CDD TRX_family 633 722 - -
Eupl03g01420 726 Gene3D Glutaredoxin 619 725 - -
Eupl03g01420 726 SUPERFAMILY TPR-like 260 483 IPR011990 GO:0005515
Eupl03g01420 726 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 9 722 IPR044534 -
Eupl03g01420 726 SMART tpr_5 328 361 IPR019734 GO:0005515
Eupl03g01420 726 SMART tpr_5 294 327 IPR019734 GO:0005515
Eupl03g01420 726 SMART tpr_5 260 293 IPR019734 GO:0005515
Eupl03g01420 726 SMART tpr_5 448 481 IPR019734 GO:0005515
Eupl03g01420 726 SMART tpr_5 562 595 IPR019734 GO:0005515
Eupl03g01420 726 SMART tpr_5 494 527 IPR019734 GO:0005515
Eupl03g01420 726 SMART tpr_5 528 561 IPR019734 GO:0005515
Eupl03g01420 726 ProSiteProfiles TPR repeat profile. 260 293 IPR019734 GO:0005515
Eupl03g01420 726 Gene3D Tetratricopeptide repeat domain 259 614 IPR011990 GO:0005515
Eupl03g01420 726 Pfam Thioredoxin 661 718 IPR013766 -
Eupl03g01420 726 SUPERFAMILY Thioredoxin-like 565 717 IPR036249 -
Eupl03g01420 726 Pfam Tetratricopeptide repeat 539 595 - -
Eupl03g01420 726 SUPERFAMILY TPR-like 498 611 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01420 Eupl-Chr3 40287338 40291682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01420 261 433 U-box Gene Family AT3G07370 27.273 2.85e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01420 - K09527 nnu:104600127 955.281