Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01390 ATGGCGGATATGAAGCAGTACAGTTTGGGTAATCAATTAGATATTGAGCAAATACTCTTGGAAGCACAAGGTCGATGGTTGCGCCCTGCTGAAATTTGTGAAATTCTTCGAAATTATCGAAAGTTCCATATTGCTCCAGAGCCTCCTAATAAGCCACCTAGTGGTTCCCTTTTTCTTTTTGATCGGAAGGTGTTGAGATACTTCAGAAAAGATGGCCATAACTGGCGGAAGAAAAAAGATGGAAAGACAGTGAAGGAAGCTCATGAGAAGCTAAAGGCTGGAAGTATTGATGTATTACACTGCTACTATGCCCATGGAGAAGATAATGAAAATTTTCAGAGACGCAGTTATTGGAGGCTCGAAGAGGATTACATGCACATTGTACTTGTCCACTATCGGGAAGTGAAGGGTAGCAAAGCTAGCTTTGGCCACCCTAGAGATACTGAAGAAGTTATACCCAGTTCCCAGATGGGCAGTACTGTGTCTTATAGTTTTCTCACAAATCATAGTCAAGTACCTTCACAAACAACAGATACCACGAGCCTGAACAGTGCTCAGACATCGGAATATGAAGATGCTGAATCTGCAGATAATCATCAAGCAAGTTCCACATACCACTCTTGTTTTGAGTTACAACAAGAGGAGGACATGCCTGTGATGAGCCAGATGGACGCTGAGCACTTGACCTCTTATTTTTCGGTTTCCTGTCCTAGTAACCAATGTGCACTCAAAATCAAGCAGGAGTTTGTGGGTAGACCAGAGGGACAAGAAAAATGGCAGATTGCTTCAAAAGACGATTCTTTACACTCCTCAAAATGGCCCATGGAAAGGAAGTTGCATACAGACTCGGCTTATGATCTGAGTACTAGGTTTCGTGAACAAAAAACTTATTATATGGATTTACATAATGCTCCCGAGCCTCTTTGTACACATCCTGAACAGCAAAATGGGCATCCTGGGCAAAATGACCTTCAAGTGCTGCCTGCAAATGCAGAACTCGGATGTCTTCTGAAATCAAATATAGGGAATGATCCAAGCATAGATGGATATGTCAACTACTGTTCCACTGCAAAACAGCCATTATTAGAATCCTTCAGAACAGAAGAAGGGTTGAAGAAACATGACAGCTTCACCCATTGGATGAGTAAAGAACTTGGAGAGGTAAATGAGTCACATATGCAGTCCAGTTCCAGGGTTTACTGGAATACTGTTGAAAGCGAAAGTGTTGTGGATGATGCGAGCATGCCTTCTGAAGTACACTTGGATGCCTACTTGTTGAGCCCCTCACTCTCTCAGGACCAGCTTTTCAGCATTATTGATTTCTCACCAAACTGGGCTTTTACAAACTCAGAAACTAAGGTTCTTATTACTGGAAAATTCTTAAAGAGTCAACAAGATGTGGCAAAATGTAAATGGTCATGTATGTTTGGGGAAGTGGAGGTTCCGGCAGAGGTTTTAGCAGATGGTGTTCTTCGTTGCCATGCTTTGTTACACACATCTGGGAGGGTCCCTTTTTATGTAACATGCTCCAACAGGTTGGCTTGTAGTGAAGTGCGAGAATTTGAATTCCGAGTACGCAGCACTCAAGATTTCAACAGAACCGATCTATATAATGGCAGTACAAGTGATATGCTTCTTCATATACGACTTGGAAAGTTATTGTCTCTGGGCTCTGTTAGTCACCCAACGTCTCTCTCCAGCAGTATTGGTGAGAAACCTCATATAAGCAGTAGAATCACTTCGTTAATGAAACGAGGTGATGCTGAATGGTTCCAGATGGTAAAGTTTACTTCAGAGGAGTTTTCCTCGGGTAAAGTAAAGGAGCAGCTGCTTCAAAAGATACTGAAAGAGAACTTGAATGCATGGCTTCTTCAGAAGGTAACTGAAGATGGTAGAGGCCCATGTGTGTTAGATAACGAGGGCCAAGGTGTGCTACATTTAACAGCTGCTCTTGGTTATGATTGGGCCATAGCACCGACAATAGCTGCAGGTGTAAATATCAATTTCCGTGATGTGAGTGGATGGACTGCACTTCACTGGGCAGCATTTTGTGGCAGGGAGCGCACAGTTGTTGCTCTCATCTCTCTGGGTGCAGCTCCTGGAGCATTAACAGATCCAAGTCCCAAATTTCCTTCAGGTAGAACACCTGCAGACCTGGCTTCTGGCAATGGACACAAAGGGATTGCTGGTTACCTGGCAGAATCTTCTTTGACGACCCATCTTTCATCTCTTACTTTGAAGGACTCAAAGGACGGTGATGTTCCAGAAATTTCTGGGGTGAAAGCTGTACAAACAGTTTCAGAACGAAGTGCCACGCCAATTAGTGATGGTGATGCACCCGATGCGTCACTGAAGGATTCATTAACTGCTGTTTGTAATGCTACTCAAGCTGCTGCACGTATTCATCAAGTCTTTAGGCTGCAGTCATTCCAAAAAAAGCAGTTAGTTGAGTATGGTGATAACAAATTTGGGATGTCTGATGAGCGCGCTCTTTCACTTATTTCTGTCAAGACACATAAGCCAGGACAACATGATGAGCCTGTGCATACTGCTGCAATAAGGATACAGAACAAGTTTCGTGGTTGGAAGGGGAGAAAAGATTTTTTGATAATCCGGCAACGGATTGTTAAGATCCAGGCCCTTGTAAGGGGGCACCAGGTGAGGAAACATTACAAAAAGATCACCTGGTCAGTAGGAATTGTGGAGAAAGCAATTTTACGCTGGAGACGGAAAGGGACTGGCTTACGCGGGTTCCGAACAGAATCACTTATCGAGTGCCCCACCACAAAAAATGGGCCCTCCAAAGAAGATGATTATGATTTCCTGAAAGAAGGCAGAAAACAGACAGAACAAAGGTTGCAGAAGGCACTTGCTAGGGTGAAATCCATGGTTCAGTATCCAGAGGCAAGAGATCAATACCGTAGGCTGCTGACTGTTGTTGCGGAGTTCCAGGAAACCAAGGTCGTGTATGATAGGGTTCTAAACAGTTCAGAAGAAGCAGATGATGGATGTGATGACCTGATTGACCTTGAAGCACTGTTGGACGATGACACCTTAATGCCTACGGCATGTTAA 3075 0.4374 MADMKQYSLGNQLDIEQILLEAQGRWLRPAEICEILRNYRKFHIAPEPPNKPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKAGSIDVLHCYYAHGEDNENFQRRSYWRLEEDYMHIVLVHYREVKGSKASFGHPRDTEEVIPSSQMGSTVSYSFLTNHSQVPSQTTDTTSLNSAQTSEYEDAESADNHQASSTYHSCFELQQEEDMPVMSQMDAEHLTSYFSVSCPSNQCALKIKQEFVGRPEGQEKWQIASKDDSLHSSKWPMERKLHTDSAYDLSTRFREQKTYYMDLHNAPEPLCTHPEQQNGHPGQNDLQVLPANAELGCLLKSNIGNDPSIDGYVNYCSTAKQPLLESFRTEEGLKKHDSFTHWMSKELGEVNESHMQSSSRVYWNTVESESVVDDASMPSEVHLDAYLLSPSLSQDQLFSIIDFSPNWAFTNSETKVLITGKFLKSQQDVAKCKWSCMFGEVEVPAEVLADGVLRCHALLHTSGRVPFYVTCSNRLACSEVREFEFRVRSTQDFNRTDLYNGSTSDMLLHIRLGKLLSLGSVSHPTSLSSSIGEKPHISSRITSLMKRGDAEWFQMVKFTSEEFSSGKVKEQLLQKILKENLNAWLLQKVTEDGRGPCVLDNEGQGVLHLTAALGYDWAIAPTIAAGVNINFRDVSGWTALHWAAFCGRERTVVALISLGAAPGALTDPSPKFPSGRTPADLASGNGHKGIAGYLAESSLTTHLSSLTLKDSKDGDVPEISGVKAVQTVSERSATPISDGDAPDASLKDSLTAVCNATQAAARIHQVFRLQSFQKKQLVEYGDNKFGMSDERALSLISVKTHKPGQHDEPVHTAAIRIQNKFRGWKGRKDFLIIRQRIVKIQALVRGHQVRKHYKKITWSVGIVEKAILRWRRKGTGLRGFRTESLIECPTTKNGPSKEDDYDFLKEGRKQTEQRLQKALARVKSMVQYPEARDQYRRLLTVVAEFQETKVVYDRVLNSSEEADDGCDDLIDLEALLDDDTLMPTAC* 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01390 1024 ProSiteProfiles IQ motif profile. 849 877 IPR000048 GO:0005515
Eupl03g01390 1024 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Eupl03g01390 1024 Gene3D Immunoglobulins 431 528 IPR013783 -
Eupl03g01390 1024 SUPERFAMILY E set domains 438 524 IPR014756 -
Eupl03g01390 1024 Gene3D - 847 896 - -
Eupl03g01390 1024 SMART iq_5 870 892 IPR000048 GO:0005515
Eupl03g01390 1024 SMART iq_5 847 869 IPR000048 GO:0005515
Eupl03g01390 1024 Coils Coil 939 959 - -
Eupl03g01390 1024 Pfam IPT/TIG domain 438 515 IPR002909 -
Eupl03g01390 1024 SUPERFAMILY Ankyrin repeat 628 734 IPR036770 -
Eupl03g01390 1024 FunFam Calmodulin-binding transcription activator 2 847 895 - -
Eupl03g01390 1024 SMART CG_1_2 18 136 IPR005559 GO:0003677
Eupl03g01390 1024 ProSiteProfiles Ankyrin repeat profile. 673 705 IPR002110 GO:0005515
Eupl03g01390 1024 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Eupl03g01390 1024 Gene3D - 597 744 IPR036770 -
Eupl03g01390 1024 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 13 986 - -
Eupl03g01390 1024 MobiDBLite consensus disorder prediction 170 203 - -
Eupl03g01390 1024 SMART ANK_2a 673 702 IPR002110 GO:0005515
Eupl03g01390 1024 SMART ANK_2a 712 741 IPR002110 GO:0005515
Eupl03g01390 1024 Pfam IQ calmodulin-binding motif 873 892 IPR000048 GO:0005515
Eupl03g01390 1024 Pfam IQ calmodulin-binding motif 850 868 IPR000048 GO:0005515
Eupl03g01390 1024 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 843 898 IPR027417 -
Eupl03g01390 1024 ProSiteProfiles IQ motif profile. 871 895 IPR000048 GO:0005515
Eupl03g01390 1024 FunFam Calmodulin-binding transcription activator 2 431 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01390 Eupl-Chr3 39758656 39800221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01390 59 1020 CAMTA Transcription Factor Family AT2G22300 50.544 0.0 884
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Eupl03g01390 CG-1 8.9e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01390 K21596 - vvi:100247418 1271.53