Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01387 ATGTCTTTCCGGAGCATAGTTCGTGACGTAAGGGATGGTTTTGGGAGCTTATCCAGACGGAGCTTTGAGGTTAGGTTGCCTGGCCATCATAAGGGCAAGTCTCAGGGCTCAGTCCATGAGATACATGACCAGCCGCTGATAATCCAACAGAGTCGTTGGGCTAGCCTTCCCCCAGAACTACTCCGTGATGTTATCAAGAGGTTGGAGGCGAGCGAGAGCACTTGGCCTTCTCGCAAGCATGTTGTTGCTTGTGCTGCAGTTTGCAGGTCATGGAGGGAAATGTGCAAAGAGATTGTCAAAAGTCCAGAATTCTGCGGGAAGCTTACCTTTCCCGTCTCTTTGAAGCAGCCTGGGCCTCGTGATGGGACTGTTCAGTGCTTCATTAAGAGAGATAAGGCTAAATTAACCTACCACCTTTTCTTGTGTCTCAGCCCTGCTTTGCTTGTTGAAAATGGGAAATTCCTTCTCTCTGCAAAAAGGAAGCGGCAAACTACTTCCACAGAGTATGTGATCTCCATGGATGCTGATAACATATCAAGATCGAGCAGTACCTACATTGGAAAACTGAGGTCTAATTTCCTTGGCACGAAATTCATAATCTATGACACCCAGCCTCCATACACTGGTGCCATTGTTTCCCCGCCAGGCCGGACAAGCCGTAGATTCTATTCCAAGAAAGTCTCCCCAAAAGTCCCAGCTGGCAGCTACAACATTGCCCAGGTCACATATGAGCTGAATGTGCTAGGCACACGGGGCCCACGCCGGATGCACTGCACCATGCACTCCATCCCTGCCTCAGCCCTTGATGCTGGTGGCATTGTCCCAGGCCAGCCTGAACTCCTCCCACGATCTCTCGAGGACTCGTTTGGGAGCATCTCCTTCTCTAAGTCCATCGATCACTCAGTTGAATTCAGCAGCTCCCGGTTCTCAGACATTGCTGGGCCTCGTGATGACGATGATGGCAAGGAGAGACCCTTGGTTCTCCGGAACAAGGCCCCAAGGTGGCACGAGCAATTACAGTGCTGGTGCCTGAATTTCCGTGGGCGGGTAACGGTTGCCTCTGTCAAGAACTTCCAGTTGATTGCTGCCACTCAGCCTGCTGCTGGTGCACCAACACCATCCCAGCCAGCTCCACCAGAACATGACAAGGTCATACTGCAGTTTGGCAAGGTTGGGAAGGACATGTTCACCATGGATTATCGTTATCCACTCTCTGCATTTCAAGCTTTCGCTATCTGCTTGAGCAGCTTTGACACCAAGTTGGCTTGTGAATAG 1275 0.5106 MSFRSIVRDVRDGFGSLSRRSFEVRLPGHHKGKSQGSVHEIHDQPLIIQQSRWASLPPELLRDVIKRLEASESTWPSRKHVVACAAVCRSWREMCKEIVKSPEFCGKLTFPVSLKQPGPRDGTVQCFIKRDKAKLTYHLFLCLSPALLVENGKFLLSAKRKRQTTSTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYTGAIVSPPGRTSRRFYSKKVSPKVPAGSYNIAQVTYELNVLGTRGPRRMHCTMHSIPASALDAGGIVPGQPELLPRSLEDSFGSISFSKSIDHSVEFSSSRFSDIAGPRDDDDGKERPLVLRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPAPPEHDKVILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01387 424 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Eupl03g01387 424 SUPERFAMILY F-box domain 49 96 IPR036047 GO:0005515
Eupl03g01387 424 SUPERFAMILY Tubby C-terminal domain-like 102 424 IPR025659 -
Eupl03g01387 424 PANTHER TUBBY-RELATED 48 422 - -
Eupl03g01387 424 Gene3D - 48 101 - -
Eupl03g01387 424 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Eupl03g01387 424 PRINTS Tubby superfamily signature 381 400 IPR000007 -
Eupl03g01387 424 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Eupl03g01387 424 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Eupl03g01387 424 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Eupl03g01387 424 PRINTS Tubby superfamily signature 402 424 IPR000007 -
Eupl03g01387 424 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Eupl03g01387 424 Gene3D Tubby Protein; Chain A 112 418 IPR025659 -
Eupl03g01387 424 FunFam Tubby-like F-box protein 48 101 - -
Eupl03g01387 424 Pfam F-box domain 53 100 IPR001810 GO:0005515
Eupl03g01387 424 CDD F-box_AtTLP-like 53 97 - -
Eupl03g01387 424 Pfam Tub family 114 419 IPR000007 -
Eupl03g01387 424 ProSitePatterns Tub family signature 2. 409 424 IPR018066 -
Eupl03g01387 424 FunFam Tubby-like F-box protein 110 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01387 Eupl-Chr3 39674780 39681541 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01387 1 424 TUB Transcription Factor Family AT1G76900 70.087 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Eupl03g01387 Tub 1.5e-117 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01387 K19600 - nnu:104586231 781.171