Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01361 ATGAGCGTCAGCGAGCTTCCGAGGAAGGAGGCTAACGTGCTCCGGGGGCATGAGGGGGCCGTCCTCGCCGCGCGGTTCAACAGCGACGGGAATTACTGCCTGAGCTGCGGCAAAGACCGCACCATCCGCCTCTGGAATCCCCACCGCGGCATTCACATCAAGACGTACAAATCCCATGGCAGAGAAGTCCGAGACGTCCATGTCACCTCGGACAACTCCAAGCTATGCTCTTGTGGTGGTGACAGACAAGTCTTTTATTGGGATGTATCAACTGGCCTCGTGATTCGAAAATTCCGTGGCCACGATAGTGAGGTAAATGCTGTAAAGTTTAATGAGTACGCATCTGTAGTAGTATCAGCAGGATATGATCGTTCTGTGCGTGCTTGGGACTGCAGATCTCACAGTACTGAGCCAATTCAGATCATTGATACGTTCTCAGACAGTGTAATGTCTGTTTGTTTGACTAAGAGTGAAATTCTTGCTGGAAGTGTTGATGGAACTGTTAGAACATTTGACATTCGTATTGGTAGAGAAATTTCTGATGACTTTGGGCAACCTGTCAATTGTATTTCATTGTCAAATGATGGTAACTGTGTATTGGCTAGTTGCTTAGATTCGACGCTGCGTCTTATGGACAGGTCTTCTGGGGAATTATTACAAGAATATAAGGGCCATACTTGTAAGTCGTACAAGATGGATTGCTGCCTTACTAACACTGATGCCCACGTAACTGGTGGATCTGAGGATGGCTTCATTTTCTTTTGGGATCTGGTAGATGCATCTGTGGTTTCAAGTTTTCGAGCACATGCCTCAGTGTGTTTTAAAAGGTGGAGGTGTGGGGTGACACATTGGGATCCCAAGATGAATGAGGCACAAGCCTTGAGGCATGGTAACAAGTGTGAGTTTTCACCCAAAGGACATCTGTATGATAACATCATCAGTCGACAGCACCATTCGGGTTTGGAAAACATGACATAA 978 0.4683 MSVSELPRKEANVLRGHEGAVLAARFNSDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTSDNSKLCSCGGDRQVFYWDVSTGLVIRKFRGHDSEVNAVKFNEYASVVVSAGYDRSVRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEILAGSVDGTVRTFDIRIGREISDDFGQPVNCISLSNDGNCVLASCLDSTLRLMDRSSGELLQEYKGHTCKSYKMDCCLTNTDAHVTGGSEDGFIFFWDLVDASVVSSFRAHASVCFKRWRCGVTHWDPKMNEAQALRHGNKCEFSPKGHLYDNIISRQHHSGLENMT* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01361 325 Gene3D - 4 308 IPR015943 GO:0005515
Eupl03g01361 325 Pfam WD domain, G-beta repeat 185 210 IPR001680 GO:0005515
Eupl03g01361 325 Pfam WD domain, G-beta repeat 12 46 IPR001680 GO:0005515
Eupl03g01361 325 Pfam WD domain, G-beta repeat 216 256 IPR001680 GO:0005515
Eupl03g01361 325 Pfam WD domain, G-beta repeat 53 88 IPR001680 GO:0005515
Eupl03g01361 325 Pfam WD domain, G-beta repeat 95 130 IPR001680 GO:0005515
Eupl03g01361 325 ProSiteProfiles Trp-Asp (WD) repeats profile. 98 130 IPR001680 GO:0005515
Eupl03g01361 325 FunFam WD repeat domain-containing protein 83 5 276 - -
Eupl03g01361 325 ProSiteProfiles Trp-Asp (WD) repeats profile. 56 97 IPR001680 GO:0005515
Eupl03g01361 325 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 98 130 - -
Eupl03g01361 325 PANTHER WD40 REPEAT PROTEIN 4 271 - -
Eupl03g01361 325 ProSiteProfiles Trp-Asp (WD) repeats profile. 14 55 IPR001680 GO:0005515
Eupl03g01361 325 CDD WD40 13 271 - -
Eupl03g01361 325 SMART WD40_4 91 130 IPR001680 GO:0005515
Eupl03g01361 325 SMART WD40_4 7 46 IPR001680 GO:0005515
Eupl03g01361 325 SMART WD40_4 215 256 IPR001680 GO:0005515
Eupl03g01361 325 SMART WD40_4 135 172 IPR001680 GO:0005515
Eupl03g01361 325 SMART WD40_4 176 212 IPR001680 GO:0005515
Eupl03g01361 325 SMART WD40_4 49 88 IPR001680 GO:0005515
Eupl03g01361 325 SUPERFAMILY WD40 repeat-like 7 274 IPR036322 GO:0005515
Eupl03g01361 325 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 56 92 - -
Eupl03g01361 325 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 14 46 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01361 8 266 Eukaryotic Initiation Factors Gene Family AT2G46290 22.727 5.99e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01361 K13124 - ming:122075744 537.724