Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01347 ATGGATTTCGACGAGTACGATTATCTGGAGAAATCGGTCGAAGACCCCGAAAGTCGAAATGCTTCTTCGGGGAAGAGAGACGGAGGTGAGAAGACTCATAGAAGTTCTCGGCGGAGAGAAGACGACGAGGACGAGGATAGAATTACAGAGACTAGGAGTAAGAGGTCGAGAGCGGAGGCGCAGAATGGTGAAAGAAGGGAACGTGAGGATCGGGAGAGGTCGTCTCGCTCGGAAAGGCGCGATAAGGATCGGCACAGAAGTGGTAGAGATGTAGAGAGGGAGTATGAGAGGGATAGGGACCGAGGTAGAGAGAGAGACCGCGAGAGAGGTGATAAAGAGAGGGAGAAAGAGAAGGAGAGGGAGAGAGAGAAGGAAAAAGAGAAGGAGAAGGAGAGGGAGAGGGAGAGAGAGAAGGAAAGAGAGAAAGAGAGAGAGAGGGAAAGAGAGAAGGAGAAGGAGAGGGAGAGGGAGAAGGAAAGAGAGAAAGAGAAGGAGAGGGAGAGAGAAAGGTCACGAAGGAGCAGCAGCCACTCGAGAAGGCATCGCAGCGATCATGAGAAGGATGTTGATAGAGAAATGACCAGGGGAAAGAGTAGAGATAGGGAGGCAAGAGAAAGAGAACTTGAAAGTGAAATGAGGGATAACAGGAGATTTAAAGAAAAGAAAGAAATGGTGGAGCCTGAAGCTGATCCAGAAAGGGATCAGAGGACTGTTTTTGCTTACCAGATGCCTTTGAAGGCGAATGAGAGGGATGTTTATGAGTTTTTCTCAAAAGCAGGAAAGGTGAGGGATGTCCGACTGATAATGGACCGGAATTCAAGGCGGTCAAAAGGAGTTGGGTATATTGAATTTTATGATGCAATGTCAGTGCCAATGGCAATAGCTCTCTCTGGCCACCAGCTTCTTGGACAACCTGTAATGGTTAAACCTTCTGAGGCTGAAAAGAACCTTGTTCAGTCAACTGCTTCTAGTGGGGGATCAGGTGCTCTGGCTGGACAATATGGAGCGGTTAATAGAAAACTCTATGTTGGGAACCTACACTTCAACATGACAGAAGATCAGCTCCGACAGGTTTTTGAACCGTTTGGTCCCGTGGAGCTTGTGCAACTACCTCTTGATCTTGAGACAGGACAGTGCAAAGGTTTTGGGTTTGTTCAATTTGCTCAGCTTGAACATGCAAAGGCAGCTCAAAGTTTGAACGGGAAATTAGAGATTGCCGGTCGGATTATCAAGGTTTCTGCTGTTACAGATCATGTTGGGGTGCAGAATGTTGGAGCAAATGCTGCAGACTTTGATGACGATGATGGGGGCGGTTTGTCTTTAAATGCTCAATCCAGAGCAATGCTTATGCAGAAATTGGATCGCAGTGGCATTGCCACTAGTATTGCAGGGTCTCTCGGAGTACCTTTGCTTAATGGGTCAGCTCCAAATCAACAAACCATCGGCCTGCCTTTAAATACGCAAACCACTGTTCCTGCCCCAGCTCTTCCAGCACTGGTTGTTACGTCTCCAGCTGCTGAACCTGTTGGGAATCCTAGCGAGTGCTTACTGTTGAAGAATATGTTTGATCCGATGACTGAGATGGAACCTGATTTTGATATGGATATCAAAGAGGAAGTTCACGTGGAGTGTTCCAATTTTGGCCCAGTGAAGCATATCTATGTGGACAAGAACAGTGCTGGTTATGTCTACTTGCGGTTTGAGACTGTTGCAGCAGCAGCTGGTGCTCAACGTGCAATGCATATGCGATGGTTTGCACGCAGGTTGATCTCGGCCGTGTTTATGGTACTGTACATTCATCCTTACCTACCATACCCTTTTTTTCTCCTAACATCTAATGCAATAATCCCTGTAAACCTAAACCGTGTATCTAATTGA 1878 0.4707 MDFDEYDYLEKSVEDPESRNASSGKRDGGEKTHRSSRRREDDEDEDRITETRSKRSRAEAQNGERREREDRERSSRSERRDKDRHRSGRDVEREYERDRDRGRERDRERGDKEREKEKEREREKEKEKEKEREREREKEREKEREREREKEKEREREKEREKEKERERERSRRSSSHSRRHRSDHEKDVDREMTRGKSRDREARERELESEMRDNRRFKEKKEMVEPEADPERDQRTVFAYQMPLKANERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGHQLLGQPVMVKPSEAEKNLVQSTASSGGSGALAGQYGAVNRKLYVGNLHFNMTEDQLRQVFEPFGPVELVQLPLDLETGQCKGFGFVQFAQLEHAKAAQSLNGKLEIAGRIIKVSAVTDHVGVQNVGANAADFDDDDGGGLSLNAQSRAMLMQKLDRSGIATSIAGSLGVPLLNGSAPNQQTIGLPLNTQTTVPAPALPALVVTSPAAEPVGNPSECLLLKNMFDPMTEMEPDFDMDIKEEVHVECSNFGPVKHIYVDKNSAGYVYLRFETVAAAAGAQRAMHMRWFARRLISAVFMVLYIHPYLPYPFFLLTSNAIIPVNLNRVSN* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01347 625 SMART rrm1_1 340 413 IPR000504 GO:0003723
Eupl03g01347 625 SMART rrm1_1 515 592 IPR000504 GO:0003723
Eupl03g01347 625 SMART rrm1_1 237 309 IPR000504 GO:0003723
Eupl03g01347 625 FunFam RNA-binding protein 39 isoform X1 229 321 - -
Eupl03g01347 625 Gene3D - 229 322 IPR012677 -
Eupl03g01347 625 NCBIfam splicing factor, CC1-like family 119 598 IPR006509 GO:0003723|GO:0005634|GO:0006397
Eupl03g01347 625 CDD RRM1_RBM39_like 237 309 - -
Eupl03g01347 625 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 236 313 IPR000504 GO:0003723
Eupl03g01347 625 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 132 597 IPR006509 GO:0003723|GO:0005634|GO:0006397
Eupl03g01347 625 MobiDBLite consensus disorder prediction 1 233 - -
Eupl03g01347 625 MobiDBLite consensus disorder prediction 12 172 - -
Eupl03g01347 625 SUPERFAMILY RNA-binding domain, RBD 230 330 IPR035979 GO:0003676
Eupl03g01347 625 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 431 532 IPR029123 -
Eupl03g01347 625 SUPERFAMILY RNA-binding domain, RBD 338 592 IPR035979 GO:0003676
Eupl03g01347 625 CDD RRM2_RBM23_RBM39 341 418 - -
Eupl03g01347 625 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 341 410 IPR000504 GO:0003723
Eupl03g01347 625 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 243 305 IPR000504 GO:0003723
Eupl03g01347 625 Coils Coil 107 174 - -
Eupl03g01347 625 Gene3D - 332 426 IPR012677 -
Eupl03g01347 625 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 339 417 IPR000504 GO:0003723
Eupl03g01347 625 Gene3D - 510 599 IPR012677 -
Eupl03g01347 625 MobiDBLite consensus disorder prediction 181 233 - -
Eupl03g01347 625 CDD RRM3_RBM39_like 513 595 - -
Eupl03g01347 625 Coils Coil 201 221 - -
Eupl03g01347 625 FunFam Splicing factor CC1-like 322 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01347 Eupl-Chr3 39028245 39044382 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01347 300 412 Eukaryotic Initiation Factors Gene Family AT4G34110 37.719 1.14e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01347 K13091 - msin:131234422 670.233