LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl03g01344	ATGTTAAAGGTGGCGAACCCAGGAGACACGAGTGAGTATGTCAGGTTCCCGACGGGTGACGAGAGAGACACCGATGAAGGACCCGGCTCTCAAGGTCATCCACAACCACAAGAAGGGATCGTAACGGTATCTGCGGCACCGATGTTTTCGGGTTACAGTAGAACGAGAGAGATGTCAGCGATGGTATCAGCTCTGACCCACGTGGTGTCTGGTGAAGGGACGACTGAAGACTGGATATACAGGCACGGGTCGGATTTTACCAGTTCTGTTACATCAACTATAGCTTCTGCTTCTGGAACTTTTTCTGCTTCTTCACCTTCATCTTCCTCTTATTCTTCTTCTTCTTCTTCATGGGGTATTGGGCAGAAGAGAGGACGTGAAGAAGAGAGTGGTCACAGTCAGTTGCCTCAATCTCTTTTTGGGGTATATAGAAGCTTTCCTGATTTCAGAACTTCACAGGGAGATTCATCATCAGGTGTACCAGTAAAAGAAGAAAGTCCCAGCATTATAACGACAACTACAACCACCAGCACCACCATTGCAGCAGCGACTCCATCAACTCCCAGTGAGAATACTTCCTATGGAGAAGGAGGAGGAGAAAGGAGAAGAAGATATAGAGGAGTGAGACAAAGGCCATGGGGCAAATGGGCTGCAGAAATAAGGGATCCACATAAAGCTGCTAGAGTTTGGTTAGGCACATTTGACACAGCCGAAGCAGCTGCAAGAGCTTATGACGAAGCTGCTCTTAGATTCAGAGGAAACAGAGCAAAACTTAACTTCCCGGAAAATGTCAGACTTGGACCATCTGTGCCTATTTCACCGGCGACCCAGTTGACGATTTCGGATCCTCGGCCGACCCTTTTGCCGGTTTCCCCAACACCATCTCCATTTTTTCAATCTCAAGCTATTCAACAGCTACAGAGCTCTGATATTGCGAGAGATTACATGCAGTACTCTCAGTTACTTCAGAGCTCTGGAGATTTTCAGAGACAACCCACGAATTTGTTAGAACAGATGTTTTATCCTTCGCCGTTTCCTCCTCCTTTTCAATCTTCTTCGTCTTCAATCGCCTCCACTGTTTCTTCTTCGTCATCTTCTTCATTCCCTCTGTTTTTTGCGGATCCGCAAATGGGTTTTTTCAGGCCACCGGAAAATCCTGATCAGGGTAGTGGGTCAGGTTTTCCGACGCCTCCGTGGACGCATTCCGGTCATTATCCGCCTTCTTCTTCTGATTATCCGCCGCCTTCTTCTGGTTGA	1257	0.4757	MLKVANPGDTSEYVRFPTGDERDTDEGPGSQGHPQPQEGIVTVSAAPMFSGYSRTREMSAMVSALTHVVSGEGTTEDWIYRHGSDFTSSVTSTIASASGTFSASSPSSSSYSSSSSSWGIGQKRGREEESGHSQLPQSLFGVYRSFPDFRTSQGDSSSGVPVKEESPSIITTTTTTSTTIAAATPSTPSENTSYGEGGGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVRLGPSVPISPATQLTISDPRPTLLPVSPTPSPFFQSQAIQQLQSSDIARDYMQYSQLLQSSGDFQRQPTNLLEQMFYPSPFPPPFQSSSSSIASTVSSSSSSSFPLFFADPQMGFFRPPENPDQGSGSGFPTPPWTHSGHYPPSSSDYPPPSSG*	419

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl03g01344	418	MobiDBLite	consensus disorder prediction	1	42	-	-
	Eupl03g01344	418	Pfam	AP2 domain	204	253	IPR001471	GO:0003700\|GO:0006355
	Eupl03g01344	418	ProSiteProfiles	AP2/ERF domain profile.	204	261	IPR001471	GO:0003700\|GO:0006355
	Eupl03g01344	418	PANTHER	DNA-BINDING DOMAIN	134	329	IPR044808	GO:0003700\|GO:0009873
	Eupl03g01344	418	FunFam	Ethylene-responsive transcription factor 2	203	262	-	-
	Eupl03g01344	418	SMART	rav1_2	204	267	IPR001471	GO:0003700\|GO:0006355
	Eupl03g01344	418	MobiDBLite	consensus disorder prediction	151	194	-	-
	Eupl03g01344	418	CDD	AP2	208	263	IPR001471	GO:0003700\|GO:0006355
	Eupl03g01344	418	MobiDBLite	consensus disorder prediction	151	206	-	-
	Eupl03g01344	418	Gene3D	AP2/ERF domain	203	263	IPR036955	GO:0003700\|GO:0006355
	Eupl03g01344	418	SUPERFAMILY	DNA-binding domain	204	262	IPR016177	GO:0003677
	Eupl03g01344	418	MobiDBLite	consensus disorder prediction	97	121	-	-
	Eupl03g01344	418	MobiDBLite	consensus disorder prediction	389	407	-	-
	Eupl03g01344	418	PRINTS	Ethylene responsive element binding protein signature	205	216	IPR001471	GO:0003700\|GO:0006355
	Eupl03g01344	418	PRINTS	Ethylene responsive element binding protein signature	227	243	IPR001471	GO:0003700\|GO:0006355
	Eupl03g01344	418	MobiDBLite	consensus disorder prediction	97	136	-	-
	Eupl03g01344	418	MobiDBLite	consensus disorder prediction	376	418	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl03g01344	Eupl-Chr3	38985400	38987673	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl03g01344	138	284	AP2-EREBP Transcription Factor Family	AT5G61890	47.020	4.22e-36	131

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Eupl03g01344		AP2	8.3e-15	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl03g01344	-		-	nnu:104599945	377.481