Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01340 ATGGATTCGAGGGTCCAGGCCGTATTTGCAGCCAGTGCCAGCTTCTTCATTATAACTCTAATCTTCGCCGTAATCTTTCTCCTCTGCAAAGAAGGTCGAAGACAAAACCCCCAAACCCAACCTAGAACTAGAAACAGAAACAGAACCAGAGCCACGCAAAACTGTAGCCTCACATCAATCACCATCGATGAAAGTGCATCGTTCGATCCCTCTCTGGATCGAATCTCCATGCCGGAGCTCATCATCGCCACCCGAAACTTCGCCGCAGAGGGAATCATCGGTGACGGCAGCTTCGGCCTCGTCTACAAAGCTCGTCTCTCTAACGGCGACACCGTCGCCGTTAAAAAGCTCAGTAAAGACGCCTTTCAAGGGTTTCGCGAGTTTCGCGCGGAAATGGAAACATTAGGTCAGGATAAGATCCGTCACCCAAATCTCGTTAGAATTCTCGGTTACTGTGTCTCAGGCGACGACCGGATCTTAATCTACGAGTTCATCGAGAAAGGCAGCCTAGACCAATGGATTCACGACACGTCATCACAGGAAAGCGTGTCAGTATCCTCGTCGTCCAACGCCAATTATCGTCCACCGTTATCTTGGGAAACGAGGACAAAGATCATCAAGGGTGTGGCCAAGGGGCTCTCTTATCTACATACTTTGGACACTCCAATTATTCATAGGGATATCAAGGCAAGTAATGTGTTATTAGACTCTGAATTTGAGGCACACATTGCTGATTTCGGATTGGCTAGGCGCATAGAAGCATGGCACTCACACGTGTCCACACAAGTTGCCGGTACTATGGGATACATGCCCCCGGAGTACAAGGAGGGCGTCACGGCGGCCACCGTTAACGCCGACGTTTATAGCTTTGGTATCTTGATGATTGAGGTTGCTACTGGAAAGCGGCCGAATTGGCCGATTAAGATGGATGGGAAGGAGGTTGGATTGATTCAATGGGCTAGGAAAATGGTGACGGACCGTCGACATATAGAGATGATCGAAGAATCGATATCGAGAGAAGGGTTGAGAGAGGCAGAGGTGGAGGAGTTCTTGAGGATTGCTGATTTGTGTACCAAGGAGAGGTCCAAAGAGAGGCCCTCCATGGGAGAGGTGGTTACATTGTTGAATCAATTATCAGGGTGA 1143 0.4926 MDSRVQAVFAASASFFIITLIFAVIFLLCKEGRRQNPQTQPRTRNRNRTRATQNCSLTSITIDESASFDPSLDRISMPELIIATRNFAAEGIIGDGSFGLVYKARLSNGDTVAVKKLSKDAFQGFREFRAEMETLGQDKIRHPNLVRILGYCVSGDDRILIYEFIEKGSLDQWIHDTSSQESVSVSSSSNANYRPPLSWETRTKIIKGVAKGLSYLHTLDTPIIHRDIKASNVLLDSEFEAHIADFGLARRIEAWHSHVSTQVAGTMGYMPPEYKEGVTAATVNADVYSFGILMIEVATGKRPNWPIKMDGKEVGLIQWARKMVTDRRHIEMIEESISREGLREAEVEEFLRIADLCTKERSKERPSMGEVVTLLNQLSG* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01340 380 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524
Eupl03g01340 380 ProSiteProfiles Protein kinase domain profile. 87 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl03g01340 380 SMART serkin_6 87 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl03g01340 380 CDD STKc_IRAK 93 378 - -
Eupl03g01340 380 SUPERFAMILY Protein kinase-like (PK-like) 66 375 IPR011009 -
Eupl03g01340 380 Pfam Protein tyrosine and serine/threonine kinase 92 374 IPR001245 GO:0004672|GO:0006468
Eupl03g01340 380 FunFam Phytosulfokine receptor 2 48 164 - -
Eupl03g01340 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Eupl03g01340 380 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 6 377 - -
Eupl03g01340 380 Gene3D Transferase(Phosphotransferase) domain 1 165 380 - -
Eupl03g01340 380 Gene3D Phosphorylase Kinase; domain 1 47 164 - -
Eupl03g01340 380 FunFam Phytosulfokine receptor 2 165 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01340 Eupl-Chr3 38897098 38899247 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01340 15 378 Receptor kinase-like Gene Family AT5G07280 39.142 5.22e-79 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Eupl03g01340 PK_Tyr_Ser-Thr 7.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01340 - - nnu:104605486 505.753