Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01328 ATGAAAAGTCTATTTCGGTTTCGCATTCAGTCCATGGAGTTGCAGAAGCTCTTCTTCTATACAGTCTTTTCTATTGCTTTTCTCGCCGGAAAAGCTTCACCAGCAGCCATTAGTGGAGTCTCTAAAGATATTCAGCAGTTGCTTTCCTTTAAAGGTGCGCTTCCAAATCCTAGTGTTCTTCAAAACTGGCAGTCGAACCAGAATCCTTGCGACTTCAATGAAGTTTCGTGTAAGGAATATCGAGTTTCTGGTCTGGATCTGAGTACGATCCCTTTGAGCTTGGATTTTCGTCTTGTTTCTTTGTTTCTGATGAGTTTAGAACGTTTGGAGAGGTTGTCTCTGAAATCTACGAACATCACTGGGAATCTCTCTTGGGCTTCGGGATCTCGTTGTAGTGGGGTGTTGAGCGAGTTGGATCTGTCCGGGAACGATTTGTCCGGTTCGGTTTCGGATATTTCGAACTTGGCTTCTTGTTCGAGCTTGAAATCTTTAAACTTGTCGAAGAATTTCTTCGGTTTTTCGGTCGGGGGGAAGGATTCCGGTGGTTTGCGGCTAGATTTGCAGACGCTTGATCTCTCTTTTAATCGGATTTCCGGTCAAAACGTCGTTCCGTGGCTTCTCTCTGGTGGTTGTGCCGAGCTAAAGTATTTGGACTTGGAGGGAAACAAAATCGCCGGGAATATTCCGGTATCTAATTGCCGGAGTTTGGAGCATCTCGATCTGTCGTCGAACAATTTCTCAGGACAGATTCCGTCGCTTGGCGACTGTGCAGCCTTGCAGCACCTGGATCTCTCGGCGAATAAATTTACTGGAGATATCGGCGACGGACTCACCGGATGTCAGCATCTGAGCTTCTTGAATCTCTCCAATAACCAGTTTTCAGGCAAAGTTCCGTCTTTTCCAAGCGGGAGCTTGCAGTATCTTTTGCTCTCATCCAATAACCTCCAAGGCCAGATACCTTTGCAACTCGCCGATGCTTGCTCGACTCTTGTGGACCTTGATCTTTCCTCAAATAACTTGTACGGTATGGTGCCTCATAATTTGGGTTCTTGTTCTTCTTTGGAATCTATTAATCTCTCCAACAACAACTTCTCTGGTGACCTCCCGACCGAAATCCTGGTCAAGATGACTACTTTGAAGAAGCTTGTTCTGTCTTACAATAATTTCATAGGCAAATTTGATTCTTTGTCGAAGCTTACAAATTTGGAGTTGTTGGATCTGAGTTCGAATAATATTCCTGGATTGATTCCCTCGGGACTGTGTCAAGATCCTAAAAACAGCTTAAAGGAGTTGTATCTTCAGAACAATCTGTTCGCTGGCGCTATACCGGCAACCCTCAGTAACTGCTCTCAGTTGGTTTCACTTGATCTCAGCTTCAATTATTTAACAGGGACGATTCCTTCTAGCTTGGGATCCCTGTCTCAGCTCCGCGATCTGATAATGTGGTTAAATCTGCTCCATGGCGAGATTCCGGAACAGCTCATGTACATTGGAACACTCGAGAATCTGATCCTAGACAATAATGGATTGAGCGGAACGATTCCTTCTGGTTTAAGCAACTGTACTAATCTGAATTGGATTTCATTATCAAGCAATAACCTGAGTGGCGAGATCCCAGCATGGATTGGTCGGCTTAGTAGTCTGGCAATCCTCAAGCTTGGAAATAACTCGTTCTCTGGCAGGATCCCACCAGAGCTCGGAGACTGCCAGAGTTTGATATGGTTGGATCTTAATAGCAATAAGTTGGAAGGGACTATTCCTCCTACCCTCTCGAAGCAATCAGGGAAAATCGCAGTCGGGTGGATTACAGGGAAGAGGTATGTTTATCTGAAGAACGATGGGAGTACTGAGTGCCGTGGAGCTGGAAACCTCCTTGAATTTGCTGGAATCAGACAGGATGGCTTAAACAGAGTCCCCACCAGGCGTTCCTGCAACTTCACTAGAGTTTACATGGGTAACACCGAATACACATTCGACAACAATGGTTCCATGATTTTTCTTGATCTGTCGTACAATTGGTTGGAGGGTAGTATTCCAAAGGAGCTCGGGGACTCGTATTATCTGTCTGTTCTGAATCTTGGCCACAATTCTCTCTCTGGTCTCATCCCACCCAACCTGGGTAGCTTGAAGAATGTTGGGATTCTCGATCTCTCTCACAATAAACTTGAAGGACCAATACCCGGTTCCCTATCCAGCCTCTCGCTGCTTTCTGAGATTGATCTTTCAAACAACAACCTCTCTGGACCGATCCCTGAATCAGGTCAGCTAGCAACTTTCCCAGCTTATAGATACACGAACAATACAGGTCTGTGTGGGTACCCTCTATCCCCTTGTGGTGATTCAGGTCCGGATGCATCAAACCCCCAGCATCAGAAATCTCACCGGAGACAAGCATCCCTCGCCGGTTGCGTGGCTTTGGGCTTGTTGTTCTCCCTTTTCTGCATCTTTGGTTTGATTATTGTCACTGTGGAGAGAAAGAAGAGGAGGATGAAGAAGGATACAACCCTAGATGTTTACATTGATAGCAGGTCTCACTCAGGGACAGCCAACACCAGCTGGAAGCTAACAGGTGCTCGGGAAGCCTTGAGTATCAACCTTGCCACCTTTGATAAACCCCTTCGGAAGCTCACCTTTGCCGACCTCCTGGAAGCCACCAATGGCTTCCACAACGACAGCCTCATTGGTTCTGGAGGCTTTGGGGATGTCTACAAAGCGCAACTCAAAGATGGGAGCGCCGTAGCCGTCAAGAAACTAATCCACGTTAGTGGACAAGGAGACCGGGAATTCACAGCTGAAATGGAGACCATTGGCAAGATCAAGCACCGAAACCTCGTCCCACTCTTGGGTTACTGCAGGGTTGGGGAAGAGCGCTTGTTAGTCTATGAATACATGAGGTTTGGCAGCTTAGAAGACATTCTACATGATCGGAAAAAGGCTGGAATCAAGCTGAATTGGGCTGCAAGGAGGAAGATTGCCATTGGGGCTGCAAGGGGCTTAGCTTTCCTCCACCATAATTGCACTCCCCACATAATTCACAGAGACATGAAGTCGAGCAACGTCCTGCTCGACGAGAACTTGGAAGCTCGGGTGTCAGATTTTGGGATGGCGAGGTTAATGAGTGCCATGGACACCCACCTTAGTGTCAGCACGCTCGCAGGCACTCCAGGTTATGTCCCACCCGAATACTACCAGAGCTTCCGATGCTCCACTAAAGGGGACGTCTACAGCTATGGGGTAGTCCTGCTTGAGCTGCTAACTGGCAAGCAACCTACAGACTCAGCTGACTTCGGAGACAATAACCTAGTGGGATGGGTGAAGCAGCATGCGAAACTGAGAATAAGTGATGTGTTCGACCCGGAACTCATTAAAGAGGACCCAAGCTTGGATTTGGAGCTACTACAACACTTAAAGGTTGCATGTGCTTGTTTAGACGATCTATCATGGCGGCGACCCACCATGATACAAGTGATGGCAATGTTCAAGGAAATCCAAGCGGGGTCTGGCGTCAACTCCTCCACCACCACTGCTGATGATGGAAGTTTCGGTGGCATGGAAGTGGTGGCAATGAGCATAAAGGAAGGTCCTGAGCTAAGCAAGCAGTAG 3603 0.4732 MKSLFRFRIQSMELQKLFFYTVFSIAFLAGKASPAAISGVSKDIQQLLSFKGALPNPSVLQNWQSNQNPCDFNEVSCKEYRVSGLDLSTIPLSLDFRLVSLFLMSLERLERLSLKSTNITGNLSWASGSRCSGVLSELDLSGNDLSGSVSDISNLASCSSLKSLNLSKNFFGFSVGGKDSGGLRLDLQTLDLSFNRISGQNVVPWLLSGGCAELKYLDLEGNKIAGNIPVSNCRSLEHLDLSSNNFSGQIPSLGDCAALQHLDLSANKFTGDIGDGLTGCQHLSFLNLSNNQFSGKVPSFPSGSLQYLLLSSNNLQGQIPLQLADACSTLVDLDLSSNNLYGMVPHNLGSCSSLESINLSNNNFSGDLPTEILVKMTTLKKLVLSYNNFIGKFDSLSKLTNLELLDLSSNNIPGLIPSGLCQDPKNSLKELYLQNNLFAGAIPATLSNCSQLVSLDLSFNYLTGTIPSSLGSLSQLRDLIMWLNLLHGEIPEQLMYIGTLENLILDNNGLSGTIPSGLSNCTNLNWISLSSNNLSGEIPAWIGRLSSLAILKLGNNSFSGRIPPELGDCQSLIWLDLNSNKLEGTIPPTLSKQSGKIAVGWITGKRYVYLKNDGSTECRGAGNLLEFAGIRQDGLNRVPTRRSCNFTRVYMGNTEYTFDNNGSMIFLDLSYNWLEGSIPKELGDSYYLSVLNLGHNSLSGLIPPNLGSLKNVGILDLSHNKLEGPIPGSLSSLSLLSEIDLSNNNLSGPIPESGQLATFPAYRYTNNTGLCGYPLSPCGDSGPDASNPQHQKSHRRQASLAGCVALGLLFSLFCIFGLIIVTVERKKRRMKKDTTLDVYIDSRSHSGTANTSWKLTGAREALSINLATFDKPLRKLTFADLLEATNGFHNDSLIGSGGFGDVYKAQLKDGSAVAVKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCRVGEERLLVYEYMRFGSLEDILHDRKKAGIKLNWAARRKIAIGAARGLAFLHHNCTPHIIHRDMKSSNVLLDENLEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKQPTDSADFGDNNLVGWVKQHAKLRISDVFDPELIKEDPSLDLELLQHLKVACACLDDLSWRRPTMIQVMAMFKEIQAGSGVNSSTTTADDGSFGGMEVVAMSIKEGPELSKQ* 1201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01328 1200 SMART serkin_6 888 1160 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl03g01328 1200 Gene3D Transferase(Phosphotransferase) domain 1 964 1165 - -
Eupl03g01328 1200 Pfam Protein kinase domain 888 1107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl03g01328 1200 ProSiteProfiles Protein kinase domain profile. 888 1163 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl03g01328 1200 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1010 1022 IPR008271 GO:0004672|GO:0006468
Eupl03g01328 1200 Pfam Leucine Rich repeats (2 copies) 377 415 IPR025875 -
Eupl03g01328 1200 FunFam serine/threonine-protein kinase BRI1-like 2 849 963 - -
Eupl03g01328 1200 ProSiteProfiles Leucine-rich repeat profile. 235 257 IPR001611 GO:0005515
Eupl03g01328 1200 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 372 597 - -
Eupl03g01328 1200 Gene3D - 600 660 - -
Eupl03g01328 1200 SUPERFAMILY L domain-like 100 322 - -
Eupl03g01328 1200 Pfam Leucine rich repeat 688 746 IPR001611 GO:0005515
Eupl03g01328 1200 Pfam Leucine rich repeat 499 557 IPR001611 GO:0005515
Eupl03g01328 1200 PRINTS Leucine-rich repeat signature 399 412 - -
Eupl03g01328 1200 PRINTS Leucine-rich repeat signature 135 148 - -
Eupl03g01328 1200 SUPERFAMILY L domain-like 656 779 - -
Eupl03g01328 1200 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 102 371 - -
Eupl03g01328 1200 Pfam Brassinosteroid receptor island domain 595 658 IPR045381 -
Eupl03g01328 1200 Pfam Leucine rich repeat N-terminal domain 42 77 IPR013210 -
Eupl03g01328 1200 FunFam Brassinosteroid LRR receptor kinase 964 1165 - -
Eupl03g01328 1200 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 657 778 - -
Eupl03g01328 1200 Gene3D Phosphorylase Kinase; domain 1 849 963 - -
Eupl03g01328 1200 SMART LRR_typ_2 497 521 IPR003591 -
Eupl03g01328 1200 SMART LRR_typ_2 733 756 IPR003591 -
Eupl03g01328 1200 SMART LRR_typ_2 545 569 IPR003591 -
Eupl03g01328 1200 SMART LRR_typ_2 709 732 IPR003591 -
Eupl03g01328 1200 SMART LRR_typ_2 399 423 IPR003591 -
Eupl03g01328 1200 FunFam Serine/threonine-protein kinase BRI1-like 1 602 659 - -
Eupl03g01328 1200 SUPERFAMILY RNI-like 277 589 - -
Eupl03g01328 1200 Pfam Leucine Rich repeat 232 248 IPR001611 GO:0005515
Eupl03g01328 1200 SUPERFAMILY Protein kinase-like (PK-like) 874 1165 IPR011009 -
Eupl03g01328 1200 ProSitePatterns Protein kinases ATP-binding region signature. 894 917 IPR017441 GO:0005524
Eupl03g01328 1200 Gene3D Ribonuclease Inhibitor 47 778 IPR032675 -
Eupl03g01328 1200 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 395 1161 - -
Eupl03g01328 1200 CDD STKc_IRAK 894 1163 - -
Eupl03g01328 1200 ProSiteProfiles Leucine-rich repeat profile. 401 422 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01328 Eupl-Chr3 38741687 38746229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01328 31 1196 Receptor kinase-like Gene Family AT4G39400 67.460 0.0 1513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Eupl03g01328 Pkinase 1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01328 K13415 - nnu:104605494 1859.73