Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01317 ATGCTTCCTTTTACAAATTACTACGGCGGGTTCGGGGGAGGTTTGTTGAGTCGGCGGGATGGATGTCTCCAAGGACTAGATTCGATGGAGATGACGGACAGTGGAGTTTCGACTTACAGCACAAGATCAACGGCGGAGGCGAAAGCAATCGCGGCATGCAAGAGTCATAGTGAGGCGGAGAGAAGGCGGAGAGAGCGAATCAACGGTCACCTGGCAACGCTTCGGACTCTTCTTCCAAATAAAACTAAAACGGACAAGGCGTCGTTGCTAGCAGAGGTGGTCCAGCATGTGAAGGAACTGAAGAAGCTAGCAGATGACGTGGGAACGCAAGATGGCGACGGATGGAGCAGAAGCAGAGGTGGCAGGGAGTGGCCGTTCCCGGGCGAGACGGACGAGCTGACGTTGGGTTACTGTGATGATGCAGAGTCTTCGATGATAAGGGTGTCGTTAAGTTGTGACGACAGGCCGGACCTGCTGTCGGACCTGACGCAAGCGCTGAGGTCAGTCCGGACTAGGGTGGTGAAGGCGGAGATGGCGACGGTAGGAGGGCGGACAAAGAGCGTGTTTGTGATACAGCAAGGGCGAGTAGGTGGTGGTGGTGGGGATGAGGACTTCGGTACGCTACGGAGAGCATTGAAGAACGTTATCGAGAAGCCAAACGTGACTGCCTCGGGCCAGGCGTTGCCGGGGAATAAGCGGCCGAGACTCTCTCACCAACTCATCACCAATGATTTCTAG 738 0.5556 MLPFTNYYGGFGGGLLSRRDGCLQGLDSMEMTDSGVSTYSTRSTAEAKAIAACKSHSEAERRRRERINGHLATLRTLLPNKTKTDKASLLAEVVQHVKELKKLADDVGTQDGDGWSRSRGGREWPFPGETDELTLGYCDDAESSMIRVSLSCDDRPDLLSDLTQALRSVRTRVVKAEMATVGGRTKSVFVIQQGRVGGGGGDEDFGTLRRALKNVIEKPNVTASGQALPGNKRPRLSHQLITNDF* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01317 245 Gene3D - 144 227 - -
Eupl03g01317 245 SUPERFAMILY ACT-like 145 222 IPR045865 -
Eupl03g01317 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 55 107 IPR036638 GO:0046983
Eupl03g01317 245 Gene3D - 47 106 IPR036638 GO:0046983
Eupl03g01317 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 51 100 IPR011598 GO:0046983
Eupl03g01317 245 ProSiteProfiles ACT domain profile. 147 226 IPR002912 -
Eupl03g01317 245 SMART finulus 57 106 IPR011598 GO:0046983
Eupl03g01317 245 Pfam Helix-loop-helix DNA-binding domain 53 100 IPR011598 GO:0046983
Eupl03g01317 245 PANTHER TRANSCRIPTION FACTOR BHLH30 32 239 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01317 Eupl-Chr3 38568304 38569736 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01317 46 242 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 47.805 4.27e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl03g01317 HLH 4.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01317 - - nnu:104595478 260.766