Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01314 ATGGCGAGGGAGAAAATTCAGATCAGGAAGATCGACAACACGACTGCTAGACAGGTGACCTTCTCGAAGAGGAGAAGAGGGCTTTTTAAGAAGGCTGAAGAGCTCTCTATTCTTTGCGATGCTGAGGTTGCTCTCATCATCTTCTCTGCAACTGGGAAGCTATTTGAATACTCCAACTCAAGTATGAAGGAAATTCTTGAAAGGCATAATTTGCAGTCGAAGAATCTTCAGAAACTTGATCAACCATCTCTTGAGCTGCAGCTAGAGAATAGCAACTACGCAAGGTTGAGGAAGGAAGTTGCGGAGAAAAGCCATCAATTGAGGCAGATGCGGGGAGAAGAGCTCCAAGGATTAAATATAGAAGAGTTGCAGCAACTAGAGAAATCCCTAGAAGCAGGATTGAGCCGTGTTCTAGAAACTAAGGGCGAAAGGATTATGAAAGAGATCAATACCCTTCAAAGAAAGGGAAAGCTATTGGCGGAAGAGAATGAGCGATTGAAACAGCAAATTGTAGAGATGTCTAAATGCCAAAGGCATGTCGCGGCCGACGTCGTCGAGAATGTTGTCTATGAAGAAGGCCAGTCATCAGACTCGGTAACCAACATCTGCAATTCCGCTGGTCCTCCTCAAGATTATGATAGCTCAGATACCTCTCTCAAGTTGGGGTTACCCTTTTTCTAG 681 0.4464 MAREKIQIRKIDNTTARQVTFSKRRRGLFKKAEELSILCDAEVALIIFSATGKLFEYSNSSMKEILERHNLQSKNLQKLDQPSLELQLENSNYARLRKEVAEKSHQLRQMRGEELQGLNIEELQQLEKSLEAGLSRVLETKGERIMKEINTLQRKGKLLAEENERLKQQIVEMSKCQRHVAADVVENVVYEEGQSSDSVTNICNSAGPPQDYDSSDTSLKLGLPFF* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01314 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Eupl03g01314 226 Coils Coil 149 169 - -
Eupl03g01314 226 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Eupl03g01314 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Eupl03g01314 226 Pfam K-box region 90 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Eupl03g01314 226 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Eupl03g01314 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Eupl03g01314 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 168 - -
Eupl03g01314 226 FunFam Transcription factor, MADS-box 13 83 - -
Eupl03g01314 226 Coils Coil 86 113 - -
Eupl03g01314 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Eupl03g01314 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Eupl03g01314 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Eupl03g01314 226 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Eupl03g01314 226 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Eupl03g01314 226 SUPERFAMILY SRF-like 3 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01314 Eupl-Chr3 38416206 38431888 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01314 1 225 MADS-box Gene Family AT2G22540 68.487 4.04e-114 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Eupl03g01314 K-box 2.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01314 - - nnu:104611910 380.948