Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01312 ATGGTGAACCCACGGTGCTTTTTAGATATAAGCATAGGAGCAGAGCTTGAAGGGAGGATAGTGGTGGAGCTGTTTAGTGATGTGGTGCCTAAAACAGCTGAGAATTTCAGGGCTCTCTGCACTGGCGAGAAGGCCATTGGTCCCAACACCGGTTTTATGATACAAGGTGGGGACATATCTGCTGGGAATGGCAAAGGGGGAGAATCCATCTATGGGTTGAAATTTGAAGATGAGAATTTTGAATTGAAACATGAAAGGAAAGGAATGTTATCAATGGCCAACTCTGGCCCTAACACCAATGGGTCTCAGTTTTTTATTACTACTACTCGAACCTCTCATCTAGATGGAAAACATGTTATTTTCGGGAAGGTAATTAAAGGCATGGGAGTGGTTCGTTCCATTGAGCATGTTACTATTGTTGATGGTGATAATCCGTCTCTTGACGTTGTAATTGTGGATTGTGGGGAAATTCTGGAAGGGGCAGATGATGGGATTTCTAATTTTTTTAAAGATGGTGATACTTATCCTGATTGGCCAGCTGACTTTGATGAGAAACCGAATGAGATTTCTTGGTGGATGAATGCTGTAGATTCTGTTAAAACTTTTGGAAATGAAAGCTACAAGAAGCAAGACTATAAGATGGCTCTTAGAAAGTATCGGAAGGCTTTGCGCTTCTTGGATGTCTGCTGGGAGAAAGAAGACATTGATGAAGAGAAGAGTTCATATTTGAGGAAGACAAAGTCACAGATATTCACAAATAGTTCTGCTTGCAAGTTGAAATTAGGAGATCTGAAAGGAGCGTTGTTGGATACCGACTTTGCAATGCGTGAAGGAGAAGGAAATGTGAAAGCTCTGTTTCGCCAAGGTCAGGCATACATGGCGCTTAATGATATAGATGCTGCAGTTGAAAGCTTCAAGAAGGCATTAGAATTGGAGCCAAATGATGGTGGAATAAAAAAGGAGCTTGCTGCTGCAAGGAAGAAGATTGCTGATAGACGTGATCAGGAGAGAAAGGCTTATTCCAGAATGTTCCTATAG 1038 0.4181 MVNPRCFLDISIGAELEGRIVVELFSDVVPKTAENFRALCTGEKAIGPNTGFMIQGGDISAGNGKGGESIYGLKFEDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTSHLDGKHVIFGKVIKGMGVVRSIEHVTIVDGDNPSLDVVIVDCGEILEGADDGISNFFKDGDTYPDWPADFDEKPNEISWWMNAVDSVKTFGNESYKKQDYKMALRKYRKALRFLDVCWEKEDIDEEKSSYLRKTKSQIFTNSSACKLKLGDLKGALLDTDFAMREGEGNVKALFRQGQAYMALNDIDAAVESFKKALELEPNDGGIKKELAAARKKIADRRDQERKAYSRMFL* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01312 345 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 155 IPR002130 GO:0000413|GO:0003755
Eupl03g01312 345 FunFam peptidyl-prolyl cis-trans isomerase D 194 345 - -
Eupl03g01312 345 Gene3D - 1 163 IPR029000 -
Eupl03g01312 345 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 88 103 IPR002130 GO:0000413|GO:0003755
Eupl03g01312 345 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 103 115 IPR002130 GO:0000413|GO:0003755
Eupl03g01312 345 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Eupl03g01312 345 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 116 131 IPR002130 GO:0000413|GO:0003755
Eupl03g01312 345 ProSiteProfiles TPR repeat region circular profile. 282 315 - -
Eupl03g01312 345 Pfam Tetratricopeptide repeat 282 315 IPR001440 GO:0005515
Eupl03g01312 345 SUPERFAMILY Cyclophilin-like 1 159 IPR029000 -
Eupl03g01312 345 ProSiteProfiles TPR repeat profile. 282 315 IPR019734 GO:0005515
Eupl03g01312 345 Gene3D Tetratricopeptide repeat domain 196 344 IPR011990 GO:0005515
Eupl03g01312 345 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 157 - -
Eupl03g01312 345 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 156 IPR002130 GO:0000413|GO:0003755
Eupl03g01312 345 FunFam Peptidyl-prolyl cis-trans isomerase CYP19-2 1 157 - -
Eupl03g01312 345 SUPERFAMILY TPR-like 193 340 IPR011990 GO:0005515
Eupl03g01312 345 SMART tpr_5 196 229 IPR019734 GO:0005515
Eupl03g01312 345 SMART tpr_5 282 315 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01312 Eupl-Chr3 38390420 38398850 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01312 17 154 U-box Gene Family AT5G67530 42.361 2.37e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01312 K05864 - nnu:104605465 624.009