Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01308 ATGGACCCATCTAAGACAGCTTCTTCTTCTTCTACACTGTCTTCTTCGTCTGATTCTTCTTTGTCTGGTAAACCAACAAGATCCGAAAAAAATGCCGAGCGGATCAAAGGAACTTGGAGCACCGAAGAAGACGAGGTTCTGACCCGACTCGTCGATCGATACGGCGCCCGAAACTGGTCTTTAATAAGTCGTTACATACCGGGACGATCCGGTAAGTCGTGCCGGCTCAGGTGGTGCAACCACCTGTGCCCAAGCGTCGAGCACCGTCCGTTTTCTCATGCCGAGGATGAGACAATCCTGGCCGCTCATGCAAGGTATGGTAACCGGTGGGCCACCATTGCAAGACTCCTCTCGGGTCGGACCGATAACGCCGTGAAGAACCATTGGAACTCTACACTTAAGAGAAAGCAAAGAGATCAAACAGACGGTTATAACGGACTGGGGGGTGTTACCTCGTCCTTGTCATCATCGGAATCTGACCCATTGACCACTCTGACCCTTGCACCACCGGGTGTCAGTTTTTCGGTGCCGGAGCAGCAGCCAGAGAATTTCCCGGTGGGGTTTTGGGATATGATGAGAGATGTTATCGCGAGAGAGGTCAGAAATTACGTCTCGTCTTCTGAAATGGCTGCTGGGTTTCCATAG 645 0.5163 MDPSKTASSSSTLSSSSDSSLSGKPTRSEKNAERIKGTWSTEEDEVLTRLVDRYGARNWSLISRYIPGRSGKSCRLRWCNHLCPSVEHRPFSHAEDETILAAHARYGNRWATIARLLSGRTDNAVKNHWNSTLKRKQRDQTDGYNGLGGVTSSLSSSESDPLTTLTLAPPGVSFSVPEQQPENFPVGFWDMMRDVIAREVRNYVSSSEMAAGFP* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01308 214 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 137 IPR017930 -
Eupl03g01308 214 Gene3D - 35 87 - -
Eupl03g01308 214 FunFam MYB transcription factor 36 87 - -
Eupl03g01308 214 SUPERFAMILY Homeodomain-like 34 129 IPR009057 -
Eupl03g01308 214 CDD SANT 90 133 IPR001005 -
Eupl03g01308 214 CDD SANT 38 82 IPR001005 -
Eupl03g01308 214 MobiDBLite consensus disorder prediction 144 162 - -
Eupl03g01308 214 ProSiteProfiles Myb-like domain profile. 31 82 IPR001005 -
Eupl03g01308 214 PANTHER MYB PROTEIN-RELATED 36 155 - -
Eupl03g01308 214 MobiDBLite consensus disorder prediction 1 26 - -
Eupl03g01308 214 MobiDBLite consensus disorder prediction 1 36 - -
Eupl03g01308 214 Gene3D - 89 146 - -
Eupl03g01308 214 SMART sant 87 135 IPR001005 -
Eupl03g01308 214 SMART sant 35 84 IPR001005 -
Eupl03g01308 214 MobiDBLite consensus disorder prediction 134 162 - -
Eupl03g01308 214 Pfam Myb-like DNA-binding domain 39 97 - -
Eupl03g01308 214 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Eupl03g01308 214 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 86 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01308 Eupl-Chr3 38346318 38347209 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01308 25 173 MYB Transcription Factor Family AT4G37260 63.576 1.43e-60 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl03g01308 Myb_DNA-bind_6 3.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01308 - - nnu:104605584 290.812