Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01281 ATGATGCCATCAACGAACGGTGCTGATCCGCAGCAGCAGCAGCAACAGCAATGGATGGCGATGCAGTACCCAGCGGCGACGATGATGATGCAACATCAGATGATGCCGCAGCATTACCCTCAACACTACATGCCTTACCCCCATCAGCAGCAGCAGCAGCAACAACAACAGCCGCAGCAGCAGGAGGGATCGACGGAGGAGAATAAGACGATCTGGATCGGAGACCTTCATTATTGGATGGACGAGAATTACTTGCACAGCTGCTTCGGTCAAACTGGCGAGGTCATTTCCATAAAAGTTATTCGTAATAAGCAGACTGGTCAGTCAGAGGGGTATGGATTTGTGGAATTCTTTTCACGTGCAGCTGCTGAGAAAGTTTTGCAAAACTACAATGGCACAGCAATGCCTAACACGGAACAGCCTTTCCGCCTGAACTGGGCATCATTTAGCATGGGGGAAAGACGTTCAGATGTCGGTTCTGACCGCTCTATATTTGTAGGAGATTTGGCTTCAGACGTTACTGATGCCTTACTGCAAGAAACTTTTGCCAGTAGATATCCATCCGTAAAAGGGGCTAAAGTTGTCATTGATGGAAATACTGGCCGTTCTAAAGGTTATGGTTTTGTGAGGTTTGGTGATGATAATGAAAGGTCACGTGCTATGACTGAAATGAACGGTGTATATTGTTCTAGTAGGCCCATGCGCATAGGTGTTGCAACCCCCAGGAAATCATCGGGATATCAACAACAGTATTCTTCACAAGCTTTGGTATTGGTAGGTGGATATGCATCAAATGGTGCCTCCGCCCAAGGTGTCCAATCTGATGGTGAATCTACTAACACAACAATATTTGTTGGAGGGCTTGACCCCAACGTCACAGATGAAGATCTCAGGCAGTCCTTTTCTCATTATGGTGAGGTTACCTCTGTAAAAATTCCAGTTGGGAAGGGATGCGGATTTGTACAGTTTGCTAACAGAAACAATGCTGATGAGGCATTGCAGAGGTTGAACGGGGCAGTCATCGGGAAGCAGACGGTTCGTCTTTCTTGGGGCCGCAATCCAGCGAACAAGCAGAGGGCGGATCCTGGTAACCAGTGGAACGGAGCATACTATGGAGGGCAGGTTTATGATGGATACGGATATGCTGCACCACAACCTCAGGACCCAAGTATGTATGCTGCAGCAGCAGCATATGGGGCTTATCCTATGTATGGAAACCACCAACAGCAAGTAAGCTGA 1239 0.4786 MMPSTNGADPQQQQQQQWMAMQYPAATMMMQHQMMPQHYPQHYMPYPHQQQQQQQQQPQQQEGSTEENKTIWIGDLHYWMDENYLHSCFGQTGEVISIKVIRNKQTGQSEGYGFVEFFSRAAAEKVLQNYNGTAMPNTEQPFRLNWASFSMGERRSDVGSDRSIFVGDLASDVTDALLQETFASRYPSVKGAKVVIDGNTGRSKGYGFVRFGDDNERSRAMTEMNGVYCSSRPMRIGVATPRKSSGYQQQYSSQALVLVGGYASNGASAQGVQSDGESTNTTIFVGGLDPNVTDEDLRQSFSHYGEVTSVKIPVGKGCGFVQFANRNNADEALQRLNGAVIGKQTVRLSWGRNPANKQRADPGNQWNGAYYGGQVYDGYGYAAPQPQDPSMYAAAAAYGAYPMYGNHQQQVS* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01281 412 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 52 357 - -
Eupl03g01281 412 FunFam polyadenylate-binding protein RBP47 isoform X2 27 154 - -
Eupl03g01281 412 MobiDBLite consensus disorder prediction 44 67 - -
Eupl03g01281 412 FunFam Polyadenylate-binding protein RBP47 263 382 - -
Eupl03g01281 412 SUPERFAMILY RNA-binding domain, RBD 273 374 IPR035979 GO:0003676
Eupl03g01281 412 Gene3D - 261 384 IPR012677 -
Eupl03g01281 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 162 241 IPR000504 GO:0003723
Eupl03g01281 412 FunFam Polyadenylate-binding protein RBP47B 155 252 - -
Eupl03g01281 412 Gene3D - 3 154 IPR012677 -
Eupl03g01281 412 Gene3D - 155 256 IPR012677 -
Eupl03g01281 412 SUPERFAMILY RNA-binding domain, RBD 150 256 IPR035979 GO:0003676
Eupl03g01281 412 CDD RRM1_SECp43_like 70 150 - -
Eupl03g01281 412 CDD RRM2_SECp43_like 161 240 - -
Eupl03g01281 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 164 233 IPR000504 GO:0003723
Eupl03g01281 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 346 IPR000504 GO:0003723
Eupl03g01281 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 138 IPR000504 GO:0003723
Eupl03g01281 412 SUPERFAMILY RNA-binding domain, RBD 33 149 IPR035979 GO:0003676
Eupl03g01281 412 SMART rrm1_1 163 237 IPR000504 GO:0003723
Eupl03g01281 412 SMART rrm1_1 282 349 IPR000504 GO:0003723
Eupl03g01281 412 SMART rrm1_1 70 145 IPR000504 GO:0003723
Eupl03g01281 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 149 IPR000504 GO:0003723
Eupl03g01281 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 353 IPR000504 GO:0003723
Eupl03g01281 412 MobiDBLite consensus disorder prediction 39 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01281 Eupl-Chr3 37923389 37939687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01281 280 366 Eukaryotic Initiation Factors Gene Family AT4G34110 31.183 5.90e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01281 - - nnu:104605688 653.284