LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl03g01237	ATGGCCCATAGATGTGTTCCGGCACCATTTCTCACGAAGACGTACCAGTTGGTGGATGATCCGATCTCGGACGATGTGATATCCTGGAACGAAACCGGTACCACGTTCGTCGTGTGGAAACCGGCTGATTTCGCCAGGGATTTGCTTCCCAATTACTTCAAGCACAACAACTTCTCAAGCTTCGTGCGCCAACTTAACACCTATGGCTTCCGAAAGATCGTGCCGGATAGATGGGAATTCTCGAACGAATTTTTCAAGCGAGGAGAAAAAGAGCTCCTCTGCGAAATCCACCGTAGGAAAACGGTTGCTGTAACGACGGCTCAGGTATCCGCCGCTGGAAAATCCAACGGCGGACCTTCGTCCCCATCGGGTGAAGATCTGGGGTCCAGCTCTACTTCATCTCCCGATACGAAAAATCACGTGTCAGACGAAACGACAGCGACGACGACGACGACGACTCAAGTGTCTGACTTATCGGGTGAAAATGAGAAACTGAGAAAAGACAATCAGGTCCTCAGCTCAGAACTGGCGCGGACGAAGAAGCAATGCGAAGATCTTATAGCTTTCCTCTCCAAATACGTCAACGTCGCACCTGATCAGATAAATCACATCATGTTGCAAGGAGCTAATGGGCCCAGCCATGATCGATTGGTAGAGATCATTGGTGATGATGATGACGACGATGAGGAGGAGGAAAAAGAAAGTGGGGAAGAAGAGTGCTTGAAGCTGTTCGGTGTTTGGTTGAAAGCAGGGAAGAAGAGGGGTCGTGATGAGGAGGATGTTAGTGGAGCTTCACTGAAGGAGATGAAGATGATGGACTATCAGCCACCGTGGATGAAGATCTATTCGTCGGCAGGCGACAGCAGCAAGGTCTGCAACTGA	882	0.5	MAHRCVPAPFLTKTYQLVDDPISDDVISWNETGTTFVVWKPADFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFSNEFFKRGEKELLCEIHRRKTVAVTTAQVSAAGKSNGGPSSPSGEDLGSSSTSSPDTKNHVSDETTATTTTTTQVSDLSGENEKLRKDNQVLSSELARTKKQCEDLIAFLSKYVNVAPDQINHIMLQGANGPSHDRLVEIIGDDDDDDEEEEKESGEEECLKLFGVWLKAGKKRGRDEEDVSGASLKEMKMMDYQPPWMKIYSSAGDSSKVCN*	294

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl03g01237	293	SUPERFAMILY	"Winged helix" DNA-binding domain	7	99	IPR036390	-
	Eupl03g01237	293	ProSitePatterns	HSF-type DNA-binding domain signature.	49	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Eupl03g01237	293	FunFam	Heat stress transcription factor B-4	2	100	-	-
	Eupl03g01237	293	Pfam	HSF-type DNA-binding	10	99	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Eupl03g01237	293	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	7	222	IPR027725	-
	Eupl03g01237	293	SMART	hsfneu3	6	99	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Eupl03g01237	293	MobiDBLite	consensus disorder prediction	108	162	-	-
	Eupl03g01237	293	PRINTS	Heat shock factor (HSF) domain signature	61	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Eupl03g01237	293	PRINTS	Heat shock factor (HSF) domain signature	10	33	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Eupl03g01237	293	PRINTS	Heat shock factor (HSF) domain signature	48	60	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Eupl03g01237	293	Coils	Coil	155	182	-	-
	Eupl03g01237	293	Gene3D	-	3	101	IPR036388	-
	Eupl03g01237	293	MobiDBLite	consensus disorder prediction	108	159	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl03g01237	Eupl-Chr3	37213641	37216589	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl03g01237	2	293	HSF	AT4G36990	49.508	3.31e-83	250

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Eupl03g01237		HSF_DNA-bind	2.5e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl03g01237	K09419		-	nnu:104606401	358.221