LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl03g01221	ATGGAAAATAAGCTCGTGGTTCTGGGTATCCCGTGGAACGTCGATACCGATGGTTTGAGACAGTATATGAGCAAATTTGGGGAGCTGGAAGATGTTATTGTAATGAAGGAGCGGTCCACTGGTAGGTCTCGCGGTTTTGGCTATGTAACATTTGCATCAGTTGAGGATGCCAAGAATACACTTGCAAGTGAGCACTTCCTTGGGAACAGAATGCTGGAAGTAAAAGTAGCAACACCGAAGGAAGAGATGAGAGCGCCTGCAAAGAAAATAACCCGGATATTTGTGGCAAGAATCCCGCAATCTGTCTCAGAGGCAGTATTCCGAAGTTATTTTGAGACATACGGCGAGATAACAGATTTATACATGCCAAAGGATCAAGGCTCAAAAGGGCATCGTGGAATTGGGTTTATCACTTTTGAAAGTGCAGATTCCGTGGACACCTTGATGGCAGAAACTCATGAATTGGAAGGTTCTACTATAGTTGTGGACCGTGCAACACCAAAGGATGAGGACTTAAGGCCATCTACCAGAGTAACACAGAGTGAATATGGTGCCTACAATGCTTATATTACAGGAGCAACTAGATATGCGGCGCTAGGTGCTCCTACATTATATGACCATCCAAGCTCAGGTTTTGGAAGAGGGCTGTCTGAACCAACTCGAGGAATGGGTAAAAAGATCTTCGTTGGCAGGCTTTCGCAGGAGGCAAGCGCTGAAGATCTTCGCCAGTATTTTGGCAGATTTGGACGTATTCTAGATGTTTATGTTCCCAAGGACCCAAAGAGAACTGGCCATCGGGGTTTTGGTTTTGTAACTTTTGCTGAGGATGGTGTGGCAGAGCGTGTCTCTCGAAGGTCTCATGAGATTTGTGGACAGCAGATTGCCATAGATTCAGCTACTCCGCTTGATGATGCTGGTACAAGTGGAAACTACATGATGGAGAGCACCGAACCATATGGGGGGTATGGTGGTCCTATGCGTGCTTATGGCAGGATGTATGGGAGTCTCGACTTTGATGATTGGGGTTACGGCAGCAGTGGTGGCAGACCTTCGAGAATGGATTGGAGGTACAAGCCATACTAG	1083	0.4663	MENKLVVLGIPWNVDTDGLRQYMSKFGELEDVIVMKERSTGRSRGFGYVTFASVEDAKNTLASEHFLGNRMLEVKVATPKEEMRAPAKKITRIFVARIPQSVSEAVFRSYFETYGEITDLYMPKDQGSKGHRGIGFITFESADSVDTLMAETHELEGSTIVVDRATPKDEDLRPSTRVTQSEYGAYNAYITGATRYAALGAPTLYDHPSSGFGRGLSEPTRGMGKKIFVGRLSQEASAEDLRQYFGRFGRILDVYVPKDPKRTGHRGFGFVTFAEDGVAERVSRRSHEICGQQIAIDSATPLDDAGTSGNYMMESTEPYGGYGGPMRAYGRMYGSLDFDDWGYGSSGGRPSRMDWRYKPY*	361

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl03g01221	360	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	225	301	IPR000504	GO:0003723
	Eupl03g01221	360	SUPERFAMILY	RNA-binding domain, RBD	89	175	IPR035979	GO:0003676
	Eupl03g01221	360	FunFam	heterogeneous nuclear ribonucleoprotein 1	1	82	-	-
	Eupl03g01221	360	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	227	282	IPR000504	GO:0003723
	Eupl03g01221	360	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	93	151	IPR000504	GO:0003723
	Eupl03g01221	360	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	5	62	IPR000504	GO:0003723
	Eupl03g01221	360	FunFam	RNA-binding family protein isoform 1	222	305	-	-
	Eupl03g01221	360	SUPERFAMILY	RNA-binding domain, RBD	3	85	IPR035979	GO:0003676
	Eupl03g01221	360	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	91	167	IPR000504	GO:0003723
	Eupl03g01221	360	Gene3D	-	218	304	IPR012677	-
	Eupl03g01221	360	SMART	rrm1_1	4	75	IPR000504	GO:0003723
	Eupl03g01221	360	SMART	rrm1_1	92	163	IPR000504	GO:0003723
	Eupl03g01221	360	SMART	rrm1_1	226	297	IPR000504	GO:0003723
	Eupl03g01221	360	Gene3D	-	84	174	IPR012677	-
	Eupl03g01221	360	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	3	79	IPR000504	GO:0003723
	Eupl03g01221	360	FunFam	heterogeneous nuclear ribonucleoprotein 1	83	175	-	-
	Eupl03g01221	360	SUPERFAMILY	RNA-binding domain, RBD	225	324	IPR035979	GO:0003676
	Eupl03g01221	360	Gene3D	-	2	83	IPR012677	-
	Eupl03g01221	360	PANTHER	RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6	224	319	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl03g01221	Eupl-Chr3	36983465	36999373	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl03g01221	5	274	Eukaryotic Initiation Factors Gene Family	AT2G36660	24.101	1.93e-10	60.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl03g01221	K14411		-	nnu:104601766	649.047