Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01219 ATGGATGTGGACCTGTTAAAGTCTGCAACAGAAGATCATCAAATGGATATTTTGATGATGATGATGCAGATGGAGAAGCTCCCTGAATTCTGCGAATCCTACCCCGAAGTTTCCGAATTGCCATCCATTAATGATTTCTCTTGTGGCACCACACCACCCATTTTTGATAACCCACATGCAAATTCACCCACATTGATCAATCCTCCTTCCTCCTTGTCATTTATTGGTAACACGGTTCAAGAACCGGTGGCACCTGCTATCCTATCAAATGGTATGGCTGGGAGGTTGAGAAATGAGGGGGAATTATTGGGTGCTAATACATTTGCTTCTTCGTCACAGAAGCGGAATTCGATGGCAGCAATGAGGGAGATGATCTTCCGGATGGCAGCAATGCAGCCGATTCACATAGACCCGGAATCGGTGAAGCCACCAAAGAGAAGGAACGTGAAGATATCAAAGGACCCACAAAGTGTGGCGGCGAGACACAGGAGGGAACGGATAAGCGAGAGAATAAGGATTCTTCAGAGACTTGTACCGGGAGGTACCAAGATGGATACAGCTTCCATGTTGGATGAAGCAATTCACTATGTAAAATTCTTGAAGACCCAGGTGAAATCGTTGGAGCAAGCAGCAGCAAACAGGCCCATGAGCCTCGGATACCCAAATTATTCTTATTTGGCAAAAGCTTACCCGCCTGCTCAAATGTTCAACCTCACCCAGATGCTTAGCTGA 732 0.4617 MDVDLLKSATEDHQMDILMMMMQMEKLPEFCESYPEVSELPSINDFSCGTTPPIFDNPHANSPTLINPPSSLSFIGNTVQEPVAPAILSNGMAGRLRNEGELLGANTFASSSQKRNSMAAMREMIFRMAAMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVKSLEQAAANRPMSLGYPNYSYLAKAYPPAQMFNLTQMLS* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01219 243 CDD bHLH_AtIND_like 152 208 - -
Eupl03g01219 243 Pfam Helix-loop-helix DNA-binding domain 161 200 IPR011598 GO:0046983
Eupl03g01219 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 200 IPR011598 GO:0046983
Eupl03g01219 243 SMART finulus 157 206 IPR011598 GO:0046983
Eupl03g01219 243 FunFam BHLH transcription factor 154 217 - -
Eupl03g01219 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 212 IPR036638 GO:0046983
Eupl03g01219 243 Gene3D - 150 218 IPR036638 GO:0046983
Eupl03g01219 243 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 103 222 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01219 Eupl-Chr3 36968130 36968861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01219 16 212 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 56.650 3.90e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl03g01219 HLH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01219 - - ming:122090116 295.049