Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01207 ATGGAGAGAGAGATGGCGGAACCTGCTGTTGCAGACAGGCGGAGAAGCAAAGGGGCCGATGCCGCGGCCCGTGCCGACGCTCTTGAGCGCCTGAAAGCCATCCGTCGTGGCGGTCGGCGTTCCGAAGGTGGGTTACAGATAAAGATGGAAGATCCAATCTACGACACCGTAGCGGAAGATGACTACGCCGCCCTCGTCGCCAAACGCAGAGAAGAAGCTCGCGGTTTCATTGTCGACGACGACGGCCTTGGATACGGTGACGAAGGCCAGGAAGAAGATTGGTCCCAAGCCGGTCTCCCTCCCTCATCCGATGAATCCGAAGGTGAATCCGAAAGACCCAAAAAGAAAAAACTGGAAAAAAAAGACCCTGCCCCCAAAAAACCCTCTTCCCTCTCCGCGGCCGCCGCCCTAATGGGAAAGCAACGGCTCTCTTCCATGTTCACTTCTTCGGTTTTCAAGAAAAGCAGGGAAGACAAGGCCAAAGGGTTGTCATCGGATAGCATCGTCGATGATGTTATTGCGGAGTTCGCCCCAGATGAAGCAGATAGAGAGAGGCGGCGTAGGGGACAACCGAAGGGTTTCGTACCCGTTGCTCCAGTTAAGAGTGAGAAGCAACCCATTGTTAGTGTTGATTCGTTGGTTAACTCTGACTTCACCATGGTTACAGACAGTGGGTCCCATACGTGTGTTCCTGAAAATGTTGGTATGGGTTGCGAGAAAGATGTGCCCAGGGAATCGAAGGATGAGAAAATGTTAACTTCTGATCCATCCCCCCCCCTGCACGATTCTTCGACCAATGGAGGCCTGGTTGTAGAGGGTCCCCCGAATACCAGTGAAATGAAAGTGGGACCGGTGAAGAGTGAGGAGGTGTTTTCTCTCAATGCGAAGATTCAGGCGGAAGTGGACCCTGCCTTGAGTGCCACTGTTGGATGGCAGGCTGTAAGGAGTGGAGAGAATGGGAATGCTGGTTGTGACGGAGGGGATGCCAATTCTAGTATTAATTGTGAAGAGCAGTCAGAATTTGAGTTGGATTCAGATGGGTCGTTACCTTTCTATATCATCGATGCCTACGAAGAGTTCTACGGTTCCAATTTGGGCACTCTCTATCTCTTTGGAAAGGTTAAAGCAGGAAGTACATATCACAGCTGCTGTGCTGTTGTAAAGAACATGCAGAGATGTGTCTATGCCATCCCAAATGGTTTTGTATTTCAAAATGATGTGATCATGGAGCTTGAGAGGGACGCTTCGGACAACCAGATTTCACCAACAATATTTCGGACAAAGCTGCAAGAGATGGCATCAGGATTGAAGAATGAAATAGCAAAGAAGTTGTTGGATCTCAGTGTGTCAACTTTTAGCATGGCCCCGGTTAAGAGAGGCTATGCATTTGAGCGATCTGACATACCTATTGGGGAGCATTATGTTCTTAAAATTAATTACCCATTTAAGGACCCCCCACTTCCCTCAGATCTCAAAGGAGAACATTTTTCTGCTCTGCTTGGAACTCATTGCAGTGCTCTGGAGCTTTTCTTCATCAAAAGGAAAATAAAGGGACCCTCCTGGTTATCAATTTCAAAATTTGCCAGCTGTCCAGCCACTCAGCGGGTAAGCTGGTGTAAATTCGAAGTTACTGTTGATTGTCCCAAGGATGTACAAATTTCATCTTCCTCAAAGGTCACACCGGAGATTCCTCCAGTAATTGTTTCAGCAATAAATTTGAAGACAATCATCAATGAAAAGCAGAATGTGAATGAAATTGTATCCGCATCCGTCATCTGCTGTCGCAAGGCAAAGATTGACACTCCTATGTTGGCATCAGAATGGAAGAGACCTGGGGTACTTAGCCATTTTTCTGTTGTGCGCAAGCTGGAAGGAGGCATATTTCCAATGGGTTTCACGAAAGAAGCTTCTGATAGAAATTCGAAGGCCGGGTCCCATGTTCTGGGATTTGAAAGCAGTGAAAGAGCCTTGTTAAATCGTCTGATGATTGAACTACACAAATTAGATAGTGATGTCCTTGTTGGACACAACATTTCTGGGTTTGACTTGGATGTTCTTCTCCACAGAGCTCAGGCTTGCAAAGTACCAAGCAGCATGTGGTCCAAAATTGGCCGTCTCAAGCGTTCTGTGATGCCTAAGCTTTCAAAGGGAAGCACCATTTTTGGATCTGGAGCAAGTCCAGGGATCATGTCTTGTATTGCAGGGCGGCTCTTGTGTGATACCTATTTGTGCTCCCGTGATCTGTTGAAGGAGGTGAGCTATTCTTTGACACAACTTGCAAAGACTCAGTTGAATAAAGACAGGAAGGAGATTGCTCCACATGATATCTCCACTATGTTCCAAACATCACGGTTGCTATTGGAACTTGTAGAGTATGGTGAGACTGATGCGTGGTTATCCATGGAACTTATGTTTCATTTGAGTGTTCTTCCCCTTACTCGTCAGCTGACTAACATCAGTGGTAATCTTTGGGGAAAGACTCTCCAGGGTGCTAGGGCGCAGAGAGTGGAATATCTTTTGTTGCATGCATTCCATGCAAAGAAGTATATTGTCCCAGATAAAATTTCTGCTCGTGCAAAGGAAACAAACTTGACAAAACGGAGAATGGCTCAGAGTGCTGAGGGTGGAGATTTTGATGATTTGAATATCAACGGCGTCCCTTTTGAGAATGATCCTCAGCATATTGATCAGAGGAAAGGCAAAAAGGGTCCTGCCTACTCTGGTGGATTAGTTTTGGAACCAAAAAGAGGTTTATATGACAAATATATATTACTTCTGGACTTCAATAGTCTCTACCCATCAATCATTCAGGAATATAATATTTGCTTCACAACAGTAGAAAGATCTGCTGAGGGACCAGTTCCTCGTTTACCATCTGGTAAAACAACCGGAGTTTTGCCTGAGTTGCTGAGGAACTTGGTTGAGAGGAGGAGAATGGTTAAGTCTTGGCTCAAGACTGCATCTGGTCTAAAGCTTCAGCAGCTTGACATTCAGCAACAAGCGCTAAAGCTCACCGCGAACAGTATGTATGGATGCTTGGGGTTTTCCAATTCAAGATTTTATGCAAAGCCACTTGCAGAGCTTATAACACTTCAAGGAAGGGAGATCCTGCAAAGTACCGTTGATCTTGTTCAGAATAATTTGAACTTAGAGGTGATCTACGGTGATACAGATTCAATCATGATTTATAGTGGGCTTGATGAAATTGCAAAAGCCAAAGCAATTGCAGGGAAAGTCATCCAAGAGGTCAACAAGAAGTATCGGTGTTTAGAGATTGATCTTGATGGCATGTACAAGAGAATGTTGCTTCTCAAGAAAAAGAAATATGCAGCTGTCAAAGTGCAGTTTAAGGATGGTTTACCGTATGAGGTCATCGAACGTAAGGGTCTTGACATGGTTCGACGTGACTGGAGTTTGCTATCAAAGGAATTAGGGGATTTCTGCCTAAGTCAAATATTATCTGGCGGGTCATGTGAGGATGTTGTTGAGTCGATACATAGCTCTCTCATGAAGGTACAGGAGGAGATGAGGAACGGGGAAGTAGCACTTGACAAATATGTCATCACAAAGACATTGACAAAACCACCTGAAGCCTACCCAGATGCCAAAAACCAACCACATGTGCAGGTAGCGTTAAGATTGAAGGAAGCTGGCTACTCCACTGGGTGCTCCGCTGGTGATACGGTCCCTTATATTATTTGCTGTGAGCAGGGGACTGGTTCAGGTTCTTCCGTAGGAATTGCTCAGAGGGCTAGGCATCCAGATGAGCTGAAAAGGGCCAATGGCAACTGGATAATTGACATTGATTACTACTTGGCGCAGCAGATTCATCCTGTGGTATCACGTCTATGTGCTTCCATTCAGGGTACAAGCCCAGCACGTTTGGCTGATTGTCTGGGGCTTGACTCATCCAAGTTCCAAGCTAAGGCAAGTGAAGTAGTCAGCAACGATCCTTCTACCTCACTCTTGTCTGCTGTAGATGATGACGAGAGATATCGTGGCTGTGAGCCTTTGCAATTGTCATGCCCCAGCTGTTCTGCTACTTTTGAGTGCCCCACTATTTCCAGTTTCGTGTTGACGTCAAGCAGTGAAAACCAAACCGAGTCGCCAGCAGAGAAATCCGGCTGTAATTTCTGGCACGAATTGCGTTGCCTGAAATGCCCAGACGAGGGTGATGGAGGTAGAATGTCTCCGGTCATGATAGCTAATCAGGTCAAACATCAAGCAGATGGGTTTATCTCCATGTATTATAAGGGCTTAATGACGTGCGACGATGAAACTTGCAAGTACACCACTCGTAGTCTGAACCTGCGAGTGGTTGGTGATTCCGAGAGAGGAACAGTTTGTCCAAATTACCCTCACTGTAATGGGCACCTTGTAAGAAAGTATACGGAAGGGGATCTATATAAGCAGCTTACATATTTCTGCCATGTGTTGGATGCCGTACGGTTCGTTGAGAAGTTGGAGCTCAAGCTTAGGATACCATTGGAGAAAGAGCTTGCTAGAATCCGCCCAGTGGTCAATTTGGCAGCATCAACAGTTCAGAAGATCCGAGACCGGTGTGCTTATGGGTGGGTTCAGATGAAGGACCTAACTGTCACCGTTTGA 4608 0.4616 MEREMAEPAVADRRRSKGADAAARADALERLKAIRRGGRRSEGGLQIKMEDPIYDTVAEDDYAALVAKRREEARGFIVDDDGLGYGDEGQEEDWSQAGLPPSSDESEGESERPKKKKLEKKDPAPKKPSSLSAAAALMGKQRLSSMFTSSVFKKSREDKAKGLSSDSIVDDVIAEFAPDEADRERRRRGQPKGFVPVAPVKSEKQPIVSVDSLVNSDFTMVTDSGSHTCVPENVGMGCEKDVPRESKDEKMLTSDPSPPLHDSSTNGGLVVEGPPNTSEMKVGPVKSEEVFSLNAKIQAEVDPALSATVGWQAVRSGENGNAGCDGGDANSSINCEEQSEFELDSDGSLPFYIIDAYEEFYGSNLGTLYLFGKVKAGSTYHSCCAVVKNMQRCVYAIPNGFVFQNDVIMELERDASDNQISPTIFRTKLQEMASGLKNEIAKKLLDLSVSTFSMAPVKRGYAFERSDIPIGEHYVLKINYPFKDPPLPSDLKGEHFSALLGTHCSALELFFIKRKIKGPSWLSISKFASCPATQRVSWCKFEVTVDCPKDVQISSSSKVTPEIPPVIVSAINLKTIINEKQNVNEIVSASVICCRKAKIDTPMLASEWKRPGVLSHFSVVRKLEGGIFPMGFTKEASDRNSKAGSHVLGFESSERALLNRLMIELHKLDSDVLVGHNISGFDLDVLLHRAQACKVPSSMWSKIGRLKRSVMPKLSKGSTIFGSGASPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLTQLAKTQLNKDRKEIAPHDISTMFQTSRLLLELVEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKISARAKETNLTKRRMAQSAEGGDFDDLNINGVPFENDPQHIDQRKGKKGPAYSGGLVLEPKRGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSAEGPVPRLPSGKTTGVLPELLRNLVERRRMVKSWLKTASGLKLQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDEIAKAKAIAGKVIQEVNKKYRCLEIDLDGMYKRMLLLKKKKYAAVKVQFKDGLPYEVIERKGLDMVRRDWSLLSKELGDFCLSQILSGGSCEDVVESIHSSLMKVQEEMRNGEVALDKYVITKTLTKPPEAYPDAKNQPHVQVALRLKEAGYSTGCSAGDTVPYIICCEQGTGSGSSVGIAQRARHPDELKRANGNWIIDIDYYLAQQIHPVVSRLCASIQGTSPARLADCLGLDSSKFQAKASEVVSNDPSTSLLSAVDDDERYRGCEPLQLSCPSCSATFECPTISSFVLTSSSENQTESPAEKSGCNFWHELRCLKCPDEGDGGRMSPVMIANQVKHQADGFISMYYKGLMTCDDETCKYTTRSLNLRVVGDSERGTVCPNYPHCNGHLVRKYTEGDLYKQLTYFCHVLDAVRFVEKLELKLRIPLEKELARIRPVVNLAASTVQKIRDRCAYGWVQMKDLTVTV* 1536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01207 1535 Gene3D - 564 878 IPR036397 GO:0003676
Eupl03g01207 1535 MobiDBLite consensus disorder prediction 232 267 - -
Eupl03g01207 1535 FunFam DNA polymerase 1325 1521 - -
Eupl03g01207 1535 FunFam DNA polymerase 1130 1316 - -
Eupl03g01207 1535 MobiDBLite consensus disorder prediction 77 137 - -
Eupl03g01207 1535 MobiDBLite consensus disorder prediction 1 24 - -
Eupl03g01207 1535 Pfam DNA polymerase alpha subunit p180 N terminal 28 94 IPR024647 -
Eupl03g01207 1535 FunFam DNA polymerase 964 1013 - -
Eupl03g01207 1535 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 17 1533 - -
Eupl03g01207 1535 SUPERFAMILY Ribonuclease H-like 452 845 IPR012337 -
Eupl03g01207 1535 Gene3D Palm domain of DNA polymerase 892 1117 IPR023211 -
Eupl03g01207 1535 Pfam DNA polymerase family B 823 1286 IPR006134 GO:0000166|GO:0003677
Eupl03g01207 1535 CDD POLBc_alpha 899 1302 IPR045846 GO:0003887|GO:1902975
Eupl03g01207 1535 MobiDBLite consensus disorder prediction 105 126 - -
Eupl03g01207 1535 SUPERFAMILY DNA/RNA polymerases 848 1302 IPR043502 -
Eupl03g01207 1535 Gene3D - 1130 1315 IPR042087 -
Eupl03g01207 1535 NCBIfam DNA polymerase (pol2) 333 1284 - -
Eupl03g01207 1535 Pfam DNA polymerase family B, exonuclease domain 380 757 IPR006133 -
Eupl03g01207 1535 FunFam DNA polymerase 564 878 - -
Eupl03g01207 1535 PRINTS DNA-directed DNA-polymerase family B signature 923 936 IPR006172 GO:0000166|GO:0003676|GO:0003887
Eupl03g01207 1535 PRINTS DNA-directed DNA-polymerase family B signature 1052 1060 IPR006172 GO:0000166|GO:0003676|GO:0003887
Eupl03g01207 1535 PRINTS DNA-directed DNA-polymerase family B signature 999 1011 IPR006172 GO:0000166|GO:0003676|GO:0003887
Eupl03g01207 1535 CDD DNA_polB_alpha_exo 564 815 - -
Eupl03g01207 1535 Gene3D DNA Polymerase alpha, zinc finger 1325 1521 IPR038256 -
Eupl03g01207 1535 Gene3D - 351 550 - -
Eupl03g01207 1535 MobiDBLite consensus disorder prediction 238 255 - -
Eupl03g01207 1535 FunFam DNA polymerase 391 517 - -
Eupl03g01207 1535 Gene3D - 391 517 - -
Eupl03g01207 1535 SMART polmehr3 564 1066 IPR006172 GO:0000166|GO:0003676|GO:0003887
Eupl03g01207 1535 Gene3D Helix hairpin bin 968 1012 - -
Eupl03g01207 1535 ProSitePatterns DNA polymerase family B signature. 1054 1062 IPR017964 GO:0000166|GO:0003676
Eupl03g01207 1535 Pfam DNA Polymerase alpha zinc finger 1325 1531 IPR015088 GO:0003887|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01207 Eupl-Chr3 36786941 36809489 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01207 13 1533 Core DNA Replication Machinery Family AT5G67100 62.726 0.0 1901
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01207 K02320 - ming:122082305 2350.86