Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01205 ATGCCAGGAAGCTTAGAGCCGTTGGACATAGGGGTTCAGATCCCATACCACTTCAGGTGTCCAATCTCGCTAGAGCTGATGCGCGACCCGGTTACGGTAAGCACGGGCCAGACTTATGACCGAGCCAGTATCGAGTCTTGGGTAGCAACCGGAAATACAACCTGCCCTGTCACCCGCTCTCCTCTTTCCGATTTCACCGTCATCCCTAACCACACCCTCCGCCGTCTCATCCAAGACTGGTGCGTCGCTAATCGATCCCTCGGTGTTGAGCGCATCCCCACCCCGAAGCAACCTGCTGATCCAGCTCTCGTCCGCACCTTACTCACCCAAGCATCTTCCAAGTCTATCCTTCGCGAGTCTCGCCTCTCTGCACTCCGTCGACTCAGGGGACTCGCTAAAGACTCGGACAAGAACCGATCTATCATCTACGCACATAACGCGCCAGATATTCTTCTCTCAATTGTCTTCTCCAACATAGAAGCTACCGAGTCAAACGAGTTGATTCACGAATCGCTCGCGCTCCTTGTAATGTTTCCACTCGCCGAGCCTGAGTGCGAATCTGTAGCTTCACAACCTGACCGAATCGTCTTCCTAGCTTCCCTCTTCTCCCATTCCTCTGTCGAAGTCCGTGTTAACGCTGCAGCTCTAATCGAGAGCGTCGTCGCCGGGACTCGATCGATAGAGCAACGGATCTTCATTGGGAATGTAGATGGGATATTCGAAGGAATTACAAGAATCTTAAACTCCCCACTAGCTTATCCAAGAGCGCTTAAGGTAGGCATTAAAGCCTTATTCGGCTTATGCCTGGTGAAGCAGAACAGACACAAGGCACTATCGGCGGGGGCGGCCGAGGCACTTATCGACCGATTAGCCGATTTCGAGAAATGCGATGCGGAGCGCGCTCTGGCTACCGTAGAATTGCTCTGCAGGGTTCCAGCGGGTTGCGCGGCGTTCGCTGCTCACGCCCTTACGGCCCCTCTGCTAGTAAAAATTATACTGAAAATATCGGACCGGGCAACGGAATACGCAGCAGGTGCGCTGCTTTCTCTCTGCTCTGAGTCAGAGCAGTTACAGAAAGATGCGGTGACGGCAGGAGTTGTGACACAGCTGTTATTGCTTGTACAGAGCGATTGCACGGAGCGAGCGAAACGAAAGGCACAGTTACTGCTTAAGCTACTTCGCGACTCATGGCCAGACGATTCGATTGCCAATTCCGACGATTTTGCTTGCAGTGATGTCGTCCCATTTTGA 1251 0.5308 MPGSLEPLDIGVQIPYHFRCPISLELMRDPVTVSTGQTYDRASIESWVATGNTTCPVTRSPLSDFTVIPNHTLRRLIQDWCVANRSLGVERIPTPKQPADPALVRTLLTQASSKSILRESRLSALRRLRGLAKDSDKNRSIIYAHNAPDILLSIVFSNIEATESNELIHESLALLVMFPLAEPECESVASQPDRIVFLASLFSHSSVEVRVNAAALIESVVAGTRSIEQRIFIGNVDGIFEGITRILNSPLAYPRALKVGIKALFGLCLVKQNRHKALSAGAAEALIDRLADFEKCDAERALATVELLCRVPAGCAAFAAHALTAPLLVKIILKISDRATEYAAGALLSLCSESEQLQKDAVTAGVVTQLLLLVQSDCTERAKRKAQLLLKLLRDSWPDDSIANSDDFACSDVVPF* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01205 416 SUPERFAMILY RING/U-box 12 88 - -
Eupl03g01205 416 Gene3D - 254 394 IPR011989 -
Eupl03g01205 416 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Eupl03g01205 416 PANTHER WDSAM1 PROTEIN 12 399 IPR045185 GO:0061630
Eupl03g01205 416 FunFam RING-type E3 ubiquitin transferase 8 90 - -
Eupl03g01205 416 SUPERFAMILY ARM repeat 105 394 IPR016024 -
Eupl03g01205 416 CDD RING-Ubox_PUB 15 67 IPR045210 -
Eupl03g01205 416 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Eupl03g01205 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Eupl03g01205 416 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Eupl03g01205 416 Gene3D - 96 250 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01205 Eupl-Chr3 36727459 36729711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01205 1 416 U-box Gene Family AT1G49780 67.221 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01205 - - nnu:104606615 668.307