Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01204 ATGTCTGAAGAGGGAGGCCATGGCAACTTCTTGTGGGAAAACCATTCATGGGCTTTCTCCAATTCGGATAATTCAGGTGGCACCCAAGAAAACTCTGGCAAGAAACAGCTCGATTCGAGCTCGAATAGCCCGACAGCAACGGCAACGGCTATAACCCAAGTCCCAGTGGGTTCGAAGAGAAACCGAAACGGGGTTCCAAAAAGTGGAAAGGGTACTGGTGGTGAGTGGAACGAATACAAAGGTGACGGTGAATCTGACCATGAGATACACATATGGACGGAGAGAGAGAGGAGGAAGAAGATGAGGAACATGTTCTCTAGTCTTCATGCTTTGCTTCCTCAGCTGCCTGCCAAGGCCGACAAATCCACCATCGTTGATGAAGCGGTGAATTACATCAAAACCCTTCAACACTCACTTCAAAAGCTACAGAAACAAAGGTTAGAAATGCTTCGAGCAGGGGCAACAACGACCATTGATTATGAGCCTTCAGTAGTTGCATCAACAACACCAACATTCGATTCTCGAGAGGCATTTTTGGCTGATCAGGGATCTTCCAAGAACTTGGCCATTACTACGAACTCACCCCACTTCCTCTCTGTGCCTCGCTTTCCTGCTTGCTTTCAAACATGGTCTTCGCCGAATGTCGTTTTGAGCGTGTGCGGTGACGATGCACAAATTAGTGTATGTGCACCAAAGAAGACGGGTCTCTTGTCCACTATCTTCTACGTACTCGAGAAGCATAAACTGGAGGTGGTGACTGCTCACATTTCATCAGATTACTACAGGAGCATGTATATGATCCATGCCCATGCAAGTGGGGCTTCTGATCAATTCCCAGAGGCATTGCCAGTGGAGGAAATATACAAGTTGGCAGTCGGGGAGATGATCTTCTGGCTTTCTTCTTTATGA 909 0.4741 MSEEGGHGNFLWENHSWAFSNSDNSGGTQENSGKKQLDSSSNSPTATATAITQVPVGSKRNRNGVPKSGKGTGGEWNEYKGDGESDHEIHIWTERERRKKMRNMFSSLHALLPQLPAKADKSTIVDEAVNYIKTLQHSLQKLQKQRLEMLRAGATTTIDYEPSVVASTTPTFDSREAFLADQGSSKNLAITTNSPHFLSVPRFPACFQTWSSPNVVLSVCGDDAQISVCAPKKTGLLSTIFYVLEKHKLEVVTAHISSDYYRSMYMIHAHASGASDQFPEALPVEEIYKLAVGEMIFWLSSL* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01204 302 CDD bHLH_AtbHLH_like 90 143 IPR045239 -
Eupl03g01204 302 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 84 148 IPR036638 GO:0046983
Eupl03g01204 302 Gene3D - 81 152 IPR036638 GO:0046983
Eupl03g01204 302 SMART finulus 93 141 IPR011598 GO:0046983
Eupl03g01204 302 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 5 299 IPR044278 GO:0003700|GO:0006355|GO:0009960
Eupl03g01204 302 MobiDBLite consensus disorder prediction 20 81 - -
Eupl03g01204 302 Pfam Helix-loop-helix DNA-binding domain 93 136 IPR011598 GO:0046983
Eupl03g01204 302 MobiDBLite consensus disorder prediction 20 59 - -
Eupl03g01204 302 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 85 135 IPR011598 GO:0046983
Eupl03g01204 302 Coils Coil 125 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01204 Eupl-Chr3 36716661 36719503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01204 2 302 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 38.024 4.69e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl03g01204 HLH 1.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01204 - - vvi:100264010 404.445