Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01203 ATGGCTGAGATGTATGATACCACCTGCTCTTCCCCTCCCTCTTCTCGTCCCACCCTTGAATCCGACGAAATTACCCTTTTTCTTCACCATCTCCTCCACTCATCATCATTGTCTTCTTCTTCTTGCATGTCCAAACAAATGCCCTTCTCATCTCCACCACCTCATCCTTCTCCGTTCTCTTCTTCCCCACAAATCAAGAATCCGCTGGAGGATCAACAACGTCCATGCCGATCAACTTTTCTTTCCGACTCGGACTGCCGAGTCAGGGACGGAACATCCACGGCCGAGTCATCTGCAGCGGTCGACTCGTCTGGTGTAATCCTTTCTTCCTCCGGCGTTTATTTTCCTGCCGAGATTAAAGAGATGGAAAACGTGTCTTCTGCTGGGGCTACAGTCAAGAGACGAAAGCTCCCGGCGGAGAATGATCTCGACGATTACGATTGTGAAAGCGAGGAGGGCCTTGAAGCGTCGGAGGGGCCATCGAAGTCGGTCCCTCCTCGTACTTCTTCGAAGAGAAGCCGAGCTGCCGAAGTTCATAATTTGTCCGAAAAGAGGAGGCGGAGTAGGATCAACGAGAAAATGAAAGCCTTGCAGAATCTCATTCCGAATTCTAACAAGACGGACAAGGCTTCAATGCTCGACGAAGCCATTGAGTATCTCAAGCAGCTTCAGCTTCAAGTACAAATGTTGTCAATGAGAAATGGGTTGAGTTTGCATCCTATGTACCTGCCTGGAGTACTGCAGCTACCTCAGATGCGAATGGCCTTCAGTGAGGGAAATGAACCGCTGCATATGAACATGGGAGCAGGCACACTTCCTGTGAACCAGGAATCCTCAACACAAACTTCGTTTGGTCTATCAAACCAATGCACAACCTCACACCAGTCAATAGTCATACCCGGAATGACAGATATCACCAATCCGGAGACCTCATTTGGGTTGAACTCATCAATTCATGTTCACCAAGGGCCCTTTCAGCTGCCCACAGTTTCTGAGGAAATATACAGGGAAGTCATGTTACCTCAACGGCAAGTAGATATAAGTCACTCTGCAAGGAATCCGTCAGATAATAAAATGAAACCCATAGCTGCAGCATCTCTGCCTTTTGATGCACAAAAATCCGTTCTCGAGGACACCAACTGTCTGGATGCATGTGTGTTGCACACAGAAGGATCACAAGGTGTTCTCCCAAAGGATGTGGACAGAAACCAGGCCTTCATTCAGCATTTGCATGGCTTGCAGACAGGAAGAAGTTTGCTTGACAACGACATCAAGACGAAGACACAGGAGGACTTTTGA 1299 0.4827 MAEMYDTTCSSPPSSRPTLESDEITLFLHHLLHSSSLSSSSCMSKQMPFSSPPPHPSPFSSSPQIKNPLEDQQRPCRSTFLSDSDCRVRDGTSTAESSAAVDSSGVILSSSGVYFPAEIKEMENVSSAGATVKRRKLPAENDLDDYDCESEEGLEASEGPSKSVPPRTSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMYLPGVLQLPQMRMAFSEGNEPLHMNMGAGTLPVNQESSTQTSFGLSNQCTTSHQSIVIPGMTDITNPETSFGLNSSIHVHQGPFQLPTVSEEIYREVMLPQRQVDISHSARNPSDNKMKPIAAASLPFDAQKSVLEDTNCLDACVLHTEGSQGVLPKDVDRNQAFIQHLHGLQTGRSLLDNDIKTKTQEDF* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01203 432 SMART finulus 180 229 IPR011598 GO:0046983
Eupl03g01203 432 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 174 223 IPR011598 GO:0046983
Eupl03g01203 432 MobiDBLite consensus disorder prediction 143 186 - -
Eupl03g01203 432 FunFam Basic helix-loop-helix transcription factor 169 232 - -
Eupl03g01203 432 MobiDBLite consensus disorder prediction 62 102 - -
Eupl03g01203 432 MobiDBLite consensus disorder prediction 172 186 - -
Eupl03g01203 432 Pfam Helix-loop-helix DNA-binding domain 178 224 IPR011598 GO:0046983
Eupl03g01203 432 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 19 352 IPR031066 -
Eupl03g01203 432 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 234 IPR036638 GO:0046983
Eupl03g01203 432 MobiDBLite consensus disorder prediction 42 102 - -
Eupl03g01203 432 CDD bHLH_AtPIF_like 174 236 IPR047265 -
Eupl03g01203 432 Gene3D - 169 233 IPR036638 GO:0046983
Eupl03g01203 432 Coils Coil 213 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01203 Eupl-Chr3 36698569 36711948 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01203 141 353 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 52.941 9.09e-49 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl03g01203 HLH 5.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01203 - - ming:122073960 457.988