Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01202 ATGCAAGGGCAAAGGAGTACTGTAGATTCCTTCCCTGAGACGTTTGAGTTTGATCATGGATCTACTTCAAGTAACACTGGTGTGGACCAGCAGCTTTTTTGGAATAATATTCTAAATCCAGTAGACAGCCGGTTACCAGACTATCTAGTATCTCCCAGTGATACAAATATCACATATGTGAACGCTGTTAGTCATGATGGGAGGAGCTTGAGTGGCTGGAATTCAGGCGAACCCAGCTCTAGTGAGAACACAAGAAACCAGATCACCCAGGATGAAGCCAAAATGGAACATGGATGGTCACCTTCCTTGAGTACTCATGCGGGAGCTGGTCCAAGGTTGGAAGAAAGACAATATGAACCAAACAATATTCTTTCTTTGGAAAGTGTTGACATAGACCTCAGTGGCAATCAGGTTCCAAATGGGCCATTGTTTTTGCAAAGTTCCAGTTCTGACGATAACCCTCAAAACGTAAACTTAAATGCGGGATATGCTGGCAACAATGGTAATGGTGGTCAGGGCATCGAAGTAGGTGTATGTCCACATCTGTGTAAGCCAGGTGGATCTGAAACTTTGCAGATTCCTTCTGCCGGTGGCTCTACTAATCCTTCTGGATCTGCTTCTGCAAGCGCTGGGTATTTGACAGAAGAGAGTGATGGTAGACCAGGTTGTTCATTGGATGGTCGGCGTTTATCCTGCAAAAGAAAGTCCCTTGAAGGAGTAACTGGACAGTCGTCTTTGGGTGGAAGTCCAAGCTGCTTTCAGCGAGCTGAGAACAGTGTATGGCACGCTGTTCCTGCTCGATATAATGCTGCTAGTAGCTTAAGTATGTCTACCCCGTTAGAAAATCCTCCTGGTGTTAATCTTCCGGAGCAGTTGAATACAAGATTTGGGGTTGGTATGAGAGGAGTAGCTTCTGACAGCCCTCCTGCTTTAAGTGTAGTAGGGAACGCAGAAAGCTCCCAGAGAAATTTTCGTATGAGAATTAATCCTGCACAACAGCTAGACTCTGCCCCATCTAATCTGTCATCAACCGGGAACACAATTAGGCGTTCTCATATTTGGTCACCCCATCAATCGTCTTCTAGACTTCTCCCATTTAATCATTCTTTGGATTTGAGGCCGATAGCAGCCAATACAAGTACTCCTCAGAATGTTATGCACATTCCCGGTTTGTCACGAAATGTGCACCCTTTCCCATGGAATGGACCTTCCAATTCGAGAGTTGGCAGTTCATCAAGTTCTGTCATTCCTGGAGAGAGAACTGCATTACGAGAGGAAGCTAACTCAAGAAGCATGCCAAGAAATGTTTCAGAACATCCTATGTTTGTACCAGCTACTGAGACAAGAAATTTGGCACAAGATCCAACAAATTGGAGTTTAGCCAATGGAAATATGAGCATTCCTGGGAATGTTGCTTCTACTTCTCGAGTTGGCTCTAGTTCAGGGGTTCATCCATCCTCTGCTCCTACTTGGGTCCCTCACCATAATCCTCCCGCTCAGTATCCACGAAGGTTATCAGAAGTTGTCCGTCGATCCTTGTTTCCGTCCTCTGGCTCTGAGTCTGCAGGCCAGAGTAGTAGTTTCCCTCCACTGCGTTCAGGACCTTCTGCTTCCTCACAAGAGATGGTTCTTTCATCTGGAGCTGGTCCCCAGGGGCATCATCCACATTATCCGAGGTCAGCATTCTGGATGGACAGACAAGGGGATGGTGTTCTTGGAGTTCCCCTGTCATTGCGGACTTTGGCTGCCGCTGGTGAAGGGAGAAGCAGGCTAGTATCTGAGATTCGTAATGCATTGGATTTCATGCGTAGGGGTGGTGAAGGCTTTAGATTTGAGGATGTTTTTATCCTTGACCAGTCAATGTTTTATGGGGTGACCGACTTGCATGATAGGCACAGAGATATGCGGCTCGATGTTGATAACATGTCTTACGAGGAATTATTGGCATTGGAAGAGCGCATAGGAAATGTGAGCACTGGGTTGAGTGAGGAAACTATTTTGAAATGTCTGAAGCAGCGAAAGTATTTATCCATCACAATAGGGGCTCCTTCAGAGGTTGAACCGTGCTGTATTTGTCAGGAGGAATATGTCGACGGGGTAGACCTTGGGATGCTGGACTGCGGACATGACTTCCACAATGACTGCATTAAACAATGGCTACTGCACAAGAATATTTGCCCCATTTGTAAAACAACAGCCTTGCTTACATGA 2211 0.4604 MQGQRSTVDSFPETFEFDHGSTSSNTGVDQQLFWNNILNPVDSRLPDYLVSPSDTNITYVNAVSHDGRSLSGWNSGEPSSSENTRNQITQDEAKMEHGWSPSLSTHAGAGPRLEERQYEPNNILSLESVDIDLSGNQVPNGPLFLQSSSSDDNPQNVNLNAGYAGNNGNGGQGIEVGVCPHLCKPGGSETLQIPSAGGSTNPSGSASASAGYLTEESDGRPGCSLDGRRLSCKRKSLEGVTGQSSLGGSPSCFQRAENSVWHAVPARYNAASSLSMSTPLENPPGVNLPEQLNTRFGVGMRGVASDSPPALSVVGNAESSQRNFRMRINPAQQLDSAPSNLSSTGNTIRRSHIWSPHQSSSRLLPFNHSLDLRPIAANTSTPQNVMHIPGLSRNVHPFPWNGPSNSRVGSSSSSVIPGERTALREEANSRSMPRNVSEHPMFVPATETRNLAQDPTNWSLANGNMSIPGNVASTSRVGSSSGVHPSSAPTWVPHHNPPAQYPRRLSEVVRRSLFPSSGSESAGQSSSFPPLRSGPSASSQEMVLSSGAGPQGHHPHYPRSAFWMDRQGDGVLGVPLSLRTLAAAGEGRSRLVSEIRNALDFMRRGGEGFRFEDVFILDQSMFYGVTDLHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETILKCLKQRKYLSITIGAPSEVEPCCICQEEYVDGVDLGMLDCGHDFHNDCIKQWLLHKNICPICKTTALLT* 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01202 736 MobiDBLite consensus disorder prediction 192 212 - -
Eupl03g01202 736 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 670 733 IPR013083 -
Eupl03g01202 736 ProSiteProfiles Zinc finger RING-type profile. 689 730 IPR001841 -
Eupl03g01202 736 SMART ring_2 689 729 IPR001841 -
Eupl03g01202 736 MobiDBLite consensus disorder prediction 399 418 - -
Eupl03g01202 736 MobiDBLite consensus disorder prediction 514 546 - -
Eupl03g01202 736 MobiDBLite consensus disorder prediction 469 499 - -
Eupl03g01202 736 MobiDBLite consensus disorder prediction 399 437 - -
Eupl03g01202 736 FunFam E3 ubiquitin-protein ligase MBR2 656 734 - -
Eupl03g01202 736 MobiDBLite consensus disorder prediction 514 560 - -
Eupl03g01202 736 MobiDBLite consensus disorder prediction 1 26 - -
Eupl03g01202 736 SUPERFAMILY RING/U-box 688 733 - -
Eupl03g01202 736 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 156 734 IPR045191 GO:0061630
Eupl03g01202 736 Pfam Ring finger domain 689 730 IPR001841 -
Eupl03g01202 736 MobiDBLite consensus disorder prediction 469 487 - -
Eupl03g01202 736 MobiDBLite consensus disorder prediction 190 228 - -
Eupl03g01202 736 MobiDBLite consensus disorder prediction 140 164 - -
Eupl03g01202 736 MobiDBLite consensus disorder prediction 66 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01202 Eupl-Chr3 36672024 36691393 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01202 1 736 C3H Transcription Factor Family AT2G15530 37.417 1.49e-121 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01202 - - nnu:104601742 979.933