Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01195 ATGGGTCGGAAGAAGCCCACCGCTCGTGACGACGAGAACCCTACTGCTGCATCTCAGGTTGGAACCACCAAATCCAAGAAGAAAGGCCGTATCATCGATGATGACGAATACGCTATCGGGACAGACTTGTCCGAGGATCAACCAAAGGAGAGCCAAGAAGAGGAGGCCGTGCCCGTTGTCGGGAAGAAGAATGGCAATAAATTAGTACAACTTAAAGACGAAGACCTCGAAGAAGAGGAAGACGATGCTCCCCCAATTGTCTTCTCCGGTAAGAAGAAGTCAAAATCCAAGAAGAGTGGTAACAGTTTGTTTAGCGCGTCTACTTTCGATGCCCTGGAAGAGGAGGAGGAAGATGGGCATAAAGGGAATGATGTTGGGGAAGAGGGAGATGAAGCTCCTGTGGTTTCTTTTTCTGGTAAGAAGAAGTCATCGAAATCTTCAAAGAAAAGTAATAGCTTGTTTACTGCTTCTGCTTTTGATGCCAGTCTTGATGAAGGAGATGGAATTGATACTTCCGCTGAATCCGAACTGCAACCCATGGATGAAAATAAAACTGAGAATGAAGATGCTCTGGCCATTGCCTTCACTGGGAAGAAGAAATCTTCTAAGAAGGGTAGTAGTTCGTTTGCAACCTCTAGTTTTGATGCTTTTGATGAAGGGGATGACAAGGATGAAAATAAAGGGGAGGAGGAAGATGCCCCTGTGATTACTTTCTCTGGTAAGAAGAAGTCGTCGAAATCTTCCAAGAAGAGCAATAGTTTGTTTGCTGCGGCACTCCTTGATGAACAGGATGACAACAATGTTTCTATTGCTGAACAGAAACTCACCACAAGGTCTGGTGATGATTCTATTGATGAAAGCAGGGAGGAGAATGAAGAGGCTGTGACGATTACTTTTTCTGGTAAGAAGAAGTCTTCGAAATCTTCCAAGAAGAGTAATATCGGCCTTGGAGATGAAGTTACTGATGCGACCGAACCCGAACAACCTTCTGTTGGAGGCAGTAGTAATGACGCTGATGGAAACAAAACCATTGATGCCAAAATTAATGAACAGGGAAGCGATGATGTTGTGCAGACTTCTAAGAACAAAAGGAAGAAGAAGAAGAGTGGGAGGACTGCCCAAGAGGAGGATGACTTAGACAAAATTCTCGCTGAGCTGGGTGAAGGCCCACCTCCTCTGAAAACTTCTGCTCCTCCTCCCCAAGAGGAGAAGGTTCAACTTCAGCCTGAACCAGTTGGCTCAGTTGATGCTATGGGTGAGGAGAAGGAAGCTGAAGCAGAAACTGGGGAGTCGGCGGCTTCAAAGAAGAAGAAAAAGAAGAAGGAAAAGGAAAAAGAGAAGAAGGCAGCAGCAGCTGCTGCGGTGGAGGTAAAGGAAGAAAAACAGGAGGAAACAAAGAGTAAAGTGTCCGACAAGAAGATCCCAAAGCATATCAGAGAAATGCAGGAGGCACTGGCAAGGCGTAAAGAATCTGAGGAGAGAAAGAAGAGAGAAGAAGAGGAGAGGTTGCGGAAGGAAGAAGAGGAGCGTCGCCGGCAGGAGGAGGTCGAGAGGCAGGCGGAGGAGGCCAGGCGCAGGAAAAAAGAGAGAGAGAAGGAGAAGCTTCTGAAGAAAAAGCAGGAAGGCAAGCTCTTAACGGGTAAACAGAAGGAAGAAGCCCGTCGGTTGGAAGCAATGAGGAATCAGTTTCTTGCTCAGAGTGGTGCGCTTCCCATTGCAGACACTGGCAGTGTGACAGCAAAACGGCCGAAGTACCAAACAAAGAAGGCTAAGCCGGCTCCGGCACAAGCAAATGATGGTGCCCCTGTAAAGGCTGTGGACAATGTAGAGGCATATGAAAACCAGCAGGAGGCTGCAGTTGAGGCGGGCACATCAGAAGTTGAGAAGGTCAAACAAATGGAGTCAACAGCAGGGGATGCTGAGGAGAAATTGGAAGTTGAGCATGAGCTTGAAGAGAACGGAGTCGAAGAAGAAGAAGATGATGAAGAATGGGATGCGAAGAGCTGGGATGATGCTGTTGTGAACTTGCCTGTTAAGAGTGCTTTTGCCGAGGAAGAGGCCGAGTCTGATCCTGAGTCTGTGCCTGTGCCTATGGTGAAGAAAGAGATCAAGCGTATCACAGCACCGGCTTCTGGCAGTGCAGGAGCGCCTCCTGTGGCAGCCAAACCCACTGTTGCTGCCAAGAAAGTTGTTATTCCCCCAACTACAATAACTCAGGATGTTGAAAGTAAAGAGGACCAACATGAGGTCGATGTTACAGAAAAGAATAGGAGAAAGGAAGCTGCAATGAAACGGGAAGCACGGGTTGCAGAGGCTTTATCAAAAAGGAGTGCCAATAACCTCCGTTCTCCAATTTGTTGTATTATGGGTCACGTTGATACTGGTAAAACCAAGCTGTTAGATTGCATCAGAGGTACTAATGTCCAGGAAGGTGAGGCTGGAGGCATTACACAGCAGATCGGGGCGACCTATTTTCCTGCAGAGAACATACGGGAGAGAACCAAGGAGCTCAAAGCTGATGCAACGTTGCGGGTCCCTGGTCTTCTGGTCATTGATACCCCGGGACACGAATCATTCACGAATTTACGGTCACGAGGATCCGGTTTATGTGATATTGCAATTTTGGTTGTTGACATAATGCACGGATTGGAACCACAGACAATTGAATCGCTGAATCTTTTGAAAATGCGGAATACGGAGTTTATAGTTGCGTTGAATAAGGTGGACAGATTATATGGTTGGAAGACTTGCCCCAACTCACCTATTGTGAAAGCTATGAAGCAGCAGTCAAATGATGTACAAAATGAGTTCAAAATGAGGCTCACCCAGATCGTCACACAATTCAAGGAGCAGGGTCTGAATACTGAATTGTACTATAAAAATAAAGAAATGGGGGAAACCTTCAGTATTGTACCTACAAGTGCAATCAGTGGTGAAGGCATTCCGGATCTGCTACTGTTATTGGTGCAGTGGACTCAGAAAACTATGGTGGAAAAGCTTATGTTTAGCAACGAAGTGCAGTGCACAGTGTTGGAGGTTAAGGTTATTGAAGGCCTAGGGACAACCATTGATGTTGTATTAGTTAATGGTATGCTTCATGAGGGAGACCAAATAGTTGTTTGTGGCATGCAGGGGCCTATTGTTACCACAATCCGTGCCTTACTGACCCCTCACCCGATGAAGGAGCTTCGAGTAAAGGGATCTTATCTGCATCATAAAGAGCTCAAGGCTGCACAGGGTATCAAGATCACTGCCCAGGGCCTTGAAAATGCCATTGCAGGTACTGGTCTATATGTGGTTGGGCCCGAGGATGAGCTAGAAGACATCAAGATAGCAACGATGCAAGACATGACGTCAGTCATGAGCAGGATTGACAAGAGTGGGGAAGGTGTGTGCGTGCAAGCATCTACGCTTGGGTCACTGGAAGCTTTGTTGGAGTTCTTGAAGAGCGATGCAGTGAAGATTCCCGTCAGTGTTATAAATATAGGCCCTGTACACAAGAAGGATGTCATGAAGGCCAGCGTCATGCTGGAGAGGAAGAAAGAATATGCTACCATCTTGGCATTTGATGTCAAAGTGACACCTGAGGCTCGCGAGCTTGCAGATGAGACTGGTGTGAAGATATTCATTGCAGATATCATTTATCACTTGTTTGATCAGTTCAAGGCTTACATTGACAATCTCAAGGAAGAAAAGAAGAAGGAAGCTGCAGAAGAAGCAGTCTTTCCATGTGTTCTCAAGATCATGCCAGACCACGTTTTTAACAAGAAGGACCCAATTATCTTGGGGGTTGATGTTCTTGAAGGCATTGCTAAGGTAGGCACTCCAATGTGCATTCCTTCAAGGGATTTTATTGATATAGGACGGGTTGCATCCATTGAAATTAACCACAAACAGGTTGATGTAGCCAAGAAAGGTCAGAAGGTGGCCATAAAGATAGCTAGCACCAATGCCGATGAGCAGCAAAAGATGTATGGCAGGCATTTTGAAATCGATGATGAGCTTGTTAGCCACATTTCTAGGAAGTCTATAGATATACTGAAAGCTAATTATCGGGAAGATCTGTCTAATGAGGAGTGGAGGCTAGTTGTGAAGCTGAAGAATCTCTTCAAGATACAATAA 4122 0.4605 MGRKKPTARDDENPTAASQVGTTKSKKKGRIIDDDEYAIGTDLSEDQPKESQEEEAVPVVGKKNGNKLVQLKDEDLEEEEDDAPPIVFSGKKKSKSKKSGNSLFSASTFDALEEEEEDGHKGNDVGEEGDEAPVVSFSGKKKSSKSSKKSNSLFTASAFDASLDEGDGIDTSAESELQPMDENKTENEDALAIAFTGKKKSSKKGSSSFATSSFDAFDEGDDKDENKGEEEDAPVITFSGKKKSSKSSKKSNSLFAAALLDEQDDNNVSIAEQKLTTRSGDDSIDESREENEEAVTITFSGKKKSSKSSKKSNIGLGDEVTDATEPEQPSVGGSSNDADGNKTIDAKINEQGSDDVVQTSKNKRKKKKSGRTAQEEDDLDKILAELGEGPPPLKTSAPPPQEEKVQLQPEPVGSVDAMGEEKEAEAETGESAASKKKKKKKEKEKEKKAAAAAAVEVKEEKQEETKSKVSDKKIPKHIREMQEALARRKESEERKKREEEERLRKEEEERRRQEEVERQAEEARRRKKEREKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAQSGALPIADTGSVTAKRPKYQTKKAKPAPAQANDGAPVKAVDNVEAYENQQEAAVEAGTSEVEKVKQMESTAGDAEEKLEVEHELEENGVEEEEDDEEWDAKSWDDAVVNLPVKSAFAEEEAESDPESVPVPMVKKEIKRITAPASGSAGAPPVAAKPTVAAKKVVIPPTTITQDVESKEDQHEVDVTEKNRRKEAAMKREARVAEALSKRSANNLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTKELKADATLRVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCPNSPIVKAMKQQSNDVQNEFKMRLTQIVTQFKEQGLNTELYYKNKEMGETFSIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLMFSNEVQCTVLEVKVIEGLGTTIDVVLVNGMLHEGDQIVVCGMQGPIVTTIRALLTPHPMKELRVKGSYLHHKELKAAQGIKITAQGLENAIAGTGLYVVGPEDELEDIKIATMQDMTSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSVINIGPVHKKDVMKASVMLERKKEYATILAFDVKVTPEARELADETGVKIFIADIIYHLFDQFKAYIDNLKEEKKKEAAEEAVFPCVLKIMPDHVFNKKDPIILGVDVLEGIAKVGTPMCIPSRDFIDIGRVASIEINHKQVDVAKKGQKVAIKIASTNADEQQKMYGRHFEIDDELVSHISRKSIDILKANYREDLSNEEWRLVVKLKNLFKIQ* 1374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01195 1373 CDD aeIF5B_II 1005 1114 - -
Eupl03g01195 1373 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 374 1370 IPR015760 -
Eupl03g01195 1373 PRINTS GTP-binding elongation factor signature 865 876 IPR000795 GO:0003924|GO:0005525
Eupl03g01195 1373 PRINTS GTP-binding elongation factor signature 785 798 IPR000795 GO:0003924|GO:0005525
Eupl03g01195 1373 PRINTS GTP-binding elongation factor signature 849 859 IPR000795 GO:0003924|GO:0005525
Eupl03g01195 1373 PRINTS GTP-binding elongation factor signature 901 910 IPR000795 GO:0003924|GO:0005525
Eupl03g01195 1373 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 776 1072 IPR027417 -
Eupl03g01195 1373 MobiDBLite consensus disorder prediction 278 297 - -
Eupl03g01195 1373 FunFam eukaryotic translation initiation factor 5B 1004 1123 - -
Eupl03g01195 1373 MobiDBLite consensus disorder prediction 26 57 - -
Eupl03g01195 1373 Coils Coil 641 661 - -
Eupl03g01195 1373 FunFam Eukaryotic translation initiation factor 5B 1236 1373 - -
Eupl03g01195 1373 MobiDBLite consensus disorder prediction 574 602 - -
Eupl03g01195 1373 MobiDBLite consensus disorder prediction 200 214 - -
Eupl03g01195 1373 MobiDBLite consensus disorder prediction 614 667 - -
Eupl03g01195 1373 NCBIfam small GTP-binding protein domain 786 910 IPR005225 GO:0005525
Eupl03g01195 1373 FunFam Eukaryotic translation initiation factor 5B 775 1003 - -
Eupl03g01195 1373 Pfam Translation-initiation factor 2 1108 1222 IPR023115 -
Eupl03g01195 1373 CDD IF2_eIF5B 784 994 - -
Eupl03g01195 1373 MobiDBLite consensus disorder prediction 741 763 - -
Eupl03g01195 1373 Pfam Elongation factor Tu domain 2 1020 1095 IPR004161 GO:0005525
Eupl03g01195 1373 MobiDBLite consensus disorder prediction 114 128 - -
Eupl03g01195 1373 CDD IF2_aeIF5B_IV 1244 1339 - -
Eupl03g01195 1373 Coils Coil 474 540 - -
Eupl03g01195 1373 Pfam Elongation factor Tu GTP binding domain 785 993 IPR000795 GO:0003924|GO:0005525
Eupl03g01195 1373 MobiDBLite consensus disorder prediction 369 384 - -
Eupl03g01195 1373 MobiDBLite consensus disorder prediction 651 667 - -
Eupl03g01195 1373 Coils Coil 1218 1238 - -
Eupl03g01195 1373 MobiDBLite consensus disorder prediction 416 437 - -
Eupl03g01195 1373 Gene3D - 1125 1229 IPR036925 -
Eupl03g01195 1373 MobiDBLite consensus disorder prediction 739 763 - -
Eupl03g01195 1373 Gene3D Translation factors 1004 1124 - -
Eupl03g01195 1373 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 781 997 IPR000795 GO:0003924|GO:0005525
Eupl03g01195 1373 MobiDBLite consensus disorder prediction 445 557 - -
Eupl03g01195 1373 SUPERFAMILY Translation proteins 1240 1372 IPR009000 -
Eupl03g01195 1373 MobiDBLite consensus disorder prediction 327 342 - -
Eupl03g01195 1373 Coils Coil 433 463 - -
Eupl03g01195 1373 FunFam Eukaryotic translation initiation factor 5B 1123 1229 - -
Eupl03g01195 1373 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1106 1235 IPR036925 -
Eupl03g01195 1373 Gene3D Translation factors 1236 1373 - -
Eupl03g01195 1373 MobiDBLite consensus disorder prediction 1 557 - -
Eupl03g01195 1373 MobiDBLite consensus disorder prediction 632 650 - -
Eupl03g01195 1373 Gene3D - 775 1003 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01195 Eupl-Chr3 36550305 36567557 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01195 207 1373 Eukaryotic Initiation Factors Gene Family AT1G76810 62.584 0.0 1178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01195 K03243 - nnu:104606686 1622.83