Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01190 ATGGCCATGGAGATTGCGGTGGCACCGTCGAACTCGCAGAAGGATGAGAAAGAAGACAACAACATTTCTGTTGAGAGCGTCGAAGGTTCATCGTCTCCTCGCAGTCCGTCTAACAACAAAAGCAACGGCATCTCTAGCAAGTACGACGAAGAGGAGGATGAAGAGGATGTTTGCAGGATTTGCCGCAACCCCGGCGATGCCGACAACCCTCTCCGGTATCCCTGCGCTTGCAGCGGAAGTATCAAATTCGTCCACCAGGATTGTCTTCTCCAGTGGCTCAACCACAGCAACGCTCGACAGTGCGAGGTGTGTAAACATGCATTTTCTTTTTCCCCCGTTTATGCTGAGAATGCTCCAGCAAGGCTTCCTTTCCAGGAGTTTGTGGTTGGAATTGCAATGAAAGGATGCCATGTTCTGCAGTTCTTCTTGCGCCTTGCTTTTGTACTTTCTGTCTGGCTTCTCATAATACCCTTCATCACATTTTGGATATGGCGATTGGCTTTTGTGAGGAGTTTTGGTGAAGCTCAGAGACTATTCCTGAGTCACATAACTACTACAGTGATTCTCACTGACTGTTTGCATGGGTTTCTACTTTCTGCTAGCATTGTTTTTATCTTTCTTGGAGCCACTTCTTTGAGGGATTATTTTAGACATCTACGAGAGCTAGGAGGGCAGGATGCTGAGAGAGAAGATGAAGGTGACAGAAATGGTGCTCGTGCTGCCAGAAGACCTCCTGCCCCAGCTAATAGGATTCATGCCGGTGATGGAAATGGTGAAGATGCTGGTGGAGGGCAAGGTATTGCTGGAGCTGGTCAAATAATCAGAAGAAATGCAGAGAATGTTGCTGCTAGGCTGGAAATGCAGGCAGCACGTCTTGAGGCGCATGTTGAACAAATGTTTGATGGCCTTGACGATGCTGATGGTGCAGAAGATGTACCCTTTGACGAGCTTGTTGGCATGCAAGGGCCTGTTTTTCATTTGGTTGAAAATGCATTTACCGTTCTGGCAAGCAATATGATATTCCTTGGTGTCGTAATTTTCGTGCCCTTTTCATTAGGCCGGATCGTCCTCCATTATTTGTCATGGCTATTCTCCTCAGCTACAAGTCCTGTGTTGTCAACAGTCATGCCATTTACAGAATCAGCCCTCTCTATAGCAAATATCACATTGAATAGTGCATTAACTGCGGTTACAAATTTGTCGTCTGAAAACCATAAAGATGGTTTGCTTTCCCATGCTGTGGAAGTGGTTGCAGAAACCTTGAAAGCAAACACAACCGGACTAGATGAAGTCTCAGACAATATCGGTAAACCACTTTCAGCAGAGCTATTGAAAGGGGCCACTGTTGGAACCTCACGTCTTTCTGATGTTACTACTCTCGCCATCGGATATATGTTTATATTCTCTCTAGTCTTCTTCTACCTTGGGGTTGTTGCTTTAATTCGTTACACTAGGGGTGAGCCTTTGACTGTAGGGAGGCTTTATGGTATTGCTTCTATAGCAGAGGCAATTCCATCCCTTGTCAGGCAATTCTTGGCAGCAATGCGACATTTAATGACTATGGTTAAGGTTGCTTTCCTTCTGGTGATAGAACTTGGGGTTTTTCCTTTGATGTGTGGCTGGTGGCTGGATGTTTGTACTATTAGGATGCTTGGGAAGACGATTACTCAAAGGGTTGAATTTTTTTCAATCTCTCCCTTAGCAAGCTCCTTGATACATTGGATAGTAGGAATCGTGTACATGCTACAAATAAGCATTTTCGTTAGCCTTCTTCGCGGGGTTTTGCGTAATGGAGTTCTATACTTTCTTCGGGACCCAGCTGATCCAAACTACAATCCATTTCGTGATCTTATCGACGACCCTGTGCACAAGCATGCTCGCCGGGTTCTGTTGTCGGTTGCTGTTTATGGGAGCTTGATTGTGATGCTGGTATTTTTACCAGTCAAACTTGCCATGCGATTGGTACCTTCTATCTTCCCACTGGATATTTCTGTATCTGATCCATTTACTGAGATTCCTGCGGACATGCTTCTTTTTCAAATCTGTATACCATTTGCAATTGAGCATTTTAAGCTGCGGGCAACAATTAAAGCCCTTCTCGGCCAATGGTTCACAGCAGTTGGTTGGGCACTTGGCTTAACTGATTTTTTACTGCCCAGACCTGAGGATGATAGTGGGCAGGAAAGTGGGAATGTGGAAAGGCAGGACAGATTACGTGATGTACAACGAGGTGGAGTTGGTCAGCAAGATCAGGCCCTAGTAGCACTTGTAGCCGCTGAAGATCCGAACAGAGGTATTCATACAATGGGGAGCTCTGATGTCGCAGAAGAGTATGATGGCGATGAACAGACTGATTCTGAGTATGGTTTTGTACTTCGCATTGTGCTGTTGTTGGTGCTGGCATGGATGACCCTGCTTCTCTTCAACTCGGCCTTGATAGTTGTACCCATTTCGCTTGGACGTGCACTCTTCAATTCCATCCCTCGTCTCCCAATAACTCATGGCATCAAGTGTAATGATATGTATGCATTCATTATTGGAAGCTATGTTATCTGGACTGCTTTAGCTGGAGCCAGATATTCTATTGAGCATGTTAGAACACAGAGAGCACGGATTCTTTTGAACAGAATCTGGAAGTGGGGTGGTATCCTTCTCAAGAGTTCTGCACTGTTGTCCATATGGATCTTTGTCATCCCGGTATTGATTGGTCTGCTGTTTGAGCTTTTGGTGATTGTGCCAATGAGGGTGCCTGTCGATGAAAGCCCGGTTTTCCTCTTGTATCAGGACTGGGCATTGGGGCTTATCTTTCTTAAGATCTGGACCAGACTGGTTATGTTGGATCACATGACACCCCTGGTGGATGAGAGTTGGCGGATTAAGTTTGAGAGGGTGAGAGAGGACGGCTTCTCCCGGCTTCGGGGGCTTTGGGTATTGCAGGAGATAGTGATCCCAATCATTATGAAGCTGCTGACAGCGCTGTGTGTTCCCTATGTGTTTGCGAGAGGGATGTTTCCCGTGCTTGGGTATCCGTTAATAGTGAACTCAGCTGTCTACCGGTTTGCCTGGGTGGGCTGCCTCAGCTTTAGTTTGCTGTGTTTCTGTGCCAAAAGATTCCATGTTTGGTTCACCAACCTCCACAACTCCATACGGGATGACCGCTATTTGATTGGCCGGAGGCTGCATAATTTTGGGGAAAAAGCAATCGAAAAGAGCAATGATACCGAGATTGTCCCAGAGACTCAAGATGTCAATCAGCAGGATGCAGTTTTAATTCAACATGAGCAAGAGGCCGATGTCGGGATGAGGCTTAGGCGTGCTAATCGGCGGCATCCCCAAAATCAGGGGCAGGCTGTATAG 3357 0.4635 MAMEIAVAPSNSQKDEKEDNNISVESVEGSSSPRSPSNNKSNGISSKYDEEEDEEDVCRICRNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAENAPARLPFQEFVVGIAMKGCHVLQFFLRLAFVLSVWLLIIPFITFWIWRLAFVRSFGEAQRLFLSHITTTVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGQDAEREDEGDRNGARAARRPPAPANRIHAGDGNGEDAGGGQGIAGAGQIIRRNAENVAARLEMQAARLEAHVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFVPFSLGRIVLHYLSWLFSSATSPVLSTVMPFTESALSIANITLNSALTAVTNLSSENHKDGLLSHAVEVVAETLKANTTGLDEVSDNIGKPLSAELLKGATVGTSRLSDVTTLAIGYMFIFSLVFFYLGVVALIRYTRGEPLTVGRLYGIASIAEAIPSLVRQFLAAMRHLMTMVKVAFLLVIELGVFPLMCGWWLDVCTIRMLGKTITQRVEFFSISPLASSLIHWIVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRLVPSIFPLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRATIKALLGQWFTAVGWALGLTDFLLPRPEDDSGQESGNVERQDRLRDVQRGGVGQQDQALVALVAAEDPNRGIHTMGSSDVAEEYDGDEQTDSEYGFVLRIVLLLVLAWMTLLLFNSALIVVPISLGRALFNSIPRLPITHGIKCNDMYAFIIGSYVIWTALAGARYSIEHVRTQRARILLNRIWKWGGILLKSSALLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMTPLVDESWRIKFERVREDGFSRLRGLWVLQEIVIPIIMKLLTALCVPYVFARGMFPVLGYPLIVNSAVYRFAWVGCLSFSLLCFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNFGEKAIEKSNDTEIVPETQDVNQQDAVLIQHEQEADVGMRLRRANRRHPQNQGQAV* 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01190 1118 MobiDBLite consensus disorder prediction 726 743 - -
Eupl03g01190 1118 Coils Coil 275 295 - -
Eupl03g01190 1118 CDD RING_CH-C4HC3_MARCH6 57 106 - -
Eupl03g01190 1118 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 116 IPR013083 -
Eupl03g01190 1118 SUPERFAMILY RING/U-box 53 108 - -
Eupl03g01190 1118 MobiDBLite consensus disorder prediction 24 44 - -
Eupl03g01190 1118 SMART ringv_2 57 105 IPR011016 GO:0008270
Eupl03g01190 1118 ProSiteProfiles Zinc finger RING-type profile. 58 105 IPR001841 -
Eupl03g01190 1118 Pfam RING-variant domain 58 104 IPR011016 GO:0008270
Eupl03g01190 1118 MobiDBLite consensus disorder prediction 1 50 - -
Eupl03g01190 1118 ProSiteProfiles Zinc finger RING-CH-type profile. 50 111 IPR011016 GO:0008270
Eupl03g01190 1118 FunFam Probable E3 ubiquitin ligase SUD1 44 116 - -
Eupl03g01190 1118 MobiDBLite consensus disorder prediction 226 264 - -
Eupl03g01190 1118 PANTHER SSM4 PROTEIN 41 1066 - -
Eupl03g01190 1118 MobiDBLite consensus disorder prediction 723 746 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01190 Eupl-Chr3 36429056 36443887 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01190 5 125 C3H Transcription Factor Family AT1G50440 28.676 4.09e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01190 K10661 - ming:122076607 1861.27