Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01181 ATGGCACAGGTTCCAGTCCAACCTCAGGCTCCTCTTCCCGGTCCGAACGGATCAGCGAACACAGGTGGGAACCAGTTCGTGTCGACGTCTCTGTACGTGGGAGACCTCGAATGGAATGTCACGGACTCGCAGCTCTATGATCTGTTCAGCCAGCTCGGTCCGGTCGTGTCGGTTCGCGTCTGCAGGGACTTGAGCACCCGGCGATCCCTCGGTTACGCCTATGTTAACTATAGCAACGCCCAAGATGCGGCAAGGGCATTGGATGTACTGAACTTCACTCCCCTCAATAACAAGCCCATCAGGATAATGTATTCTCATCGTGACCCTAGCATCCGTAAAAGTGGGACTGCCAATATTTTTATCAAGAATCTCGACAAGGCAATTGACAACAAAGCACTACATGAGACATTTTCTTCCTTTGGAAATATTCTTTCTTGCAAGATAGCTATAGATCCTTCTGGCCAGTCAAAAGGCTATGGATTTGTTCAATTTGATAATGAAGAATCTGCCCAAAATGCAATAGATAAGCTGAACGGCATGCTGCTCAATGATAAACAAGTTTTTGTTGGACCCTTTCTTCGTAAGCATGAAAGAGATACTGCTATGAGCAAGGCGAAATTCAATAACGTCTTTGTTAAAAATCTCTCAGAATCAACAACAGAAGAAGATCTAAAGAAAATTTTTGGTGAATATGGAACTATTACTAGTGTCGTAGTGATGAGGGACGGAGATGGAAAATCGAAGTGTTTTGGATTTGTCAATTTTGAGAATGCAGATGATGCCGCCCAATCTGTTGAGGCTCTTAATGGAAATAAATCTGATGATAAGGAGTGGTATGTTGGGAAAGCACAGAAAAAATCTGAAAGAGAGACTGAACTGAAAGAGCGATTTCAGAGTATGAAGGAGACAGTAGACAAATTTCAAGGGGTGAACTTGTATGTGAAGAACTTAGATGATAGCATTGGTGATGATAAACTGAGGGAATTGTTTTTGGAGTTTGGAACAATTACTTCATGCAAGGTTATGCGAGACCCCAGTGGAATAAGTAGGGGTTCGGGATTTGTTGCCTTTTCAGCTCCCGAGGAAGCATCTCGAGCTCTTGCGGAGATGAACGGCAAAATGATTGTTGGCAAACCCCTATATGTTGCACTTGCACAGCGGAAAGAAGATAGAAAAGCAAGGTTACAGGCACAATTTTCACAAATGCGGCCAGTTGCAATGGCGCCTTCTGTTGCTCCTCGTATGCCAATGTACCCCCCTGGTGGTCCAGGTCTTGGACAACAAATATTTTATGGTCAAGGCCCCCCTACTGCTATCATTCCTCCCCAGCCTGGATTTGGATACCAGCAGCAACTTGTTCCTGGCATGAGGCCTGGTGGGGCAGCAATGCCAAATTTCTTCATGCCATTGGTCCAGCAGGGTCAGCAGGGTCAACGTCCAGGGGGCAGACGTGCGGGAGGACCAGTGCAACAAACCCAGCAGCCAATGCCACTAATGCAGCAGCAGATGATTCCAAGGGGACGCATGTACCGTTACCCGCCTGGTCGTAACATGCCTGATGTGCCCATGCCTGGAGTTGCTGGAGGCATGCTATCCGTTCCGTATGACATGGGTGGCATGCCATTGCGAGATGCTTCCATGTCGCAGCCTATCCCAATAGGTGCTTTGGCTAGTGCTCTTGCAAATGCAACACCTGAACAGCAGAGGACGATGCTGGGTGAAAGTCTATACCCGCTCGTGGATCAGCTGGAGCATGATATGGCGGCCAAGGTGACGGGCATGCTTCTGGAGATGGACCAGACTGAGGTTTTACACTTGCTTGAGTCACCAGAAGCTTTGAAAGCGAAAGTTGCGGAGGCTATGGAGGTTCTGAGGAATGTTGCTCAGCAGCAGCAGCAGGCCGGCAGCCCAACTGATCAACTGGCTTCGCTGTCGCTTAATGATACCCTCATCTCCTAA 1959 0.4788 MAQVPVQPQAPLPGPNGSANTGGNQFVSTSLYVGDLEWNVTDSQLYDLFSQLGPVVSVRVCRDLSTRRSLGYAYVNYSNAQDAARALDVLNFTPLNNKPIRIMYSHRDPSIRKSGTANIFIKNLDKAIDNKALHETFSSFGNILSCKIAIDPSGQSKGYGFVQFDNEESAQNAIDKLNGMLLNDKQVFVGPFLRKHERDTAMSKAKFNNVFVKNLSESTTEEDLKKIFGEYGTITSVVVMRDGDGKSKCFGFVNFENADDAAQSVEALNGNKSDDKEWYVGKAQKKSERETELKERFQSMKETVDKFQGVNLYVKNLDDSIGDDKLRELFLEFGTITSCKVMRDPSGISRGSGFVAFSAPEEASRALAEMNGKMIVGKPLYVALAQRKEDRKARLQAQFSQMRPVAMAPSVAPRMPMYPPGGPGLGQQIFYGQGPPTAIIPPQPGFGYQQQLVPGMRPGGAAMPNFFMPLVQQGQQGQRPGGRRAGGPVQQTQQPMPLMQQQMIPRGRMYRYPPGRNMPDVPMPGVAGGMLSVPYDMGGMPLRDASMSQPIPIGALASALANATPEQQRTMLGESLYPLVDQLEHDMAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQQAGSPTDQLASLSLNDTLIS* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01181 652 FunFam Polyadenylate-binding protein 16 117 - -
Eupl03g01181 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Eupl03g01181 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Eupl03g01181 652 Gene3D - 118 205 IPR012677 -
Eupl03g01181 652 Gene3D - 310 405 IPR012677 -
Eupl03g01181 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 186 IPR000504 GO:0003723
Eupl03g01181 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Eupl03g01181 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 101 IPR000504 GO:0003723
Eupl03g01181 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 380 IPR000504 GO:0003723
Eupl03g01181 652 FunFam Polyadenylate-binding protein 198 293 - -
Eupl03g01181 652 Gene3D - 548 631 - -
Eupl03g01181 652 CDD RRM4_I_PABPs 309 387 - -
Eupl03g01181 652 Gene3D - 22 117 IPR012677 -
Eupl03g01181 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 387 IPR000504 GO:0003723
Eupl03g01181 652 SUPERFAMILY PABC (PABP) domain 493 644 IPR036053 GO:0003723
Eupl03g01181 652 FunFam Polyadenylate-binding protein 548 630 - -
Eupl03g01181 652 FunFam Polyadenylate-binding protein 118 191 - -
Eupl03g01181 652 SUPERFAMILY RNA-binding domain, RBD 204 292 IPR035979 GO:0003676
Eupl03g01181 652 SUPERFAMILY RNA-binding domain, RBD 28 198 IPR035979 GO:0003676
Eupl03g01181 652 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 552 629 IPR002004 GO:0003723
Eupl03g01181 652 PANTHER RNA BINDING PROTEIN 28 91 - -
Eupl03g01181 652 SUPERFAMILY RNA-binding domain, RBD 307 403 IPR035979 GO:0003676
Eupl03g01181 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 189 IPR000504 GO:0003723
Eupl03g01181 652 SMART rrm1_1 209 281 IPR000504 GO:0003723
Eupl03g01181 652 SMART rrm1_1 311 383 IPR000504 GO:0003723
Eupl03g01181 652 SMART rrm1_1 118 190 IPR000504 GO:0003723
Eupl03g01181 652 SMART rrm1_1 30 103 IPR000504 GO:0003723
Eupl03g01181 652 SMART poly_2 564 627 IPR002004 GO:0003723
Eupl03g01181 652 CDD RRM1_I_PABPs 30 109 IPR034364 -
Eupl03g01181 652 CDD RRM3_I_PABPs 207 286 - -
Eupl03g01181 652 FunFam Polyadenylate-binding protein 294 398 - -
Eupl03g01181 652 SMART rrm2_1 311 383 IPR003954 GO:0003676
Eupl03g01181 652 SMART rrm2_1 118 190 IPR003954 GO:0003676
Eupl03g01181 652 SMART rrm2_1 209 281 IPR003954 GO:0003676
Eupl03g01181 652 SMART rrm2_1 30 103 IPR003954 GO:0003676
Eupl03g01181 652 MobiDBLite consensus disorder prediction 1 21 - -
Eupl03g01181 652 Pfam Poly-adenylate binding protein, unique domain 560 624 IPR002004 GO:0003723
Eupl03g01181 652 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 30 625 IPR006515 GO:0003723
Eupl03g01181 652 CDD RRM2_I_PABPs 115 191 IPR045305 -
Eupl03g01181 652 Gene3D - 206 309 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01181 Eupl-Chr3 36326643 36347874 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01181 28 651 Eukaryotic Initiation Factors Gene Family AT1G49760 72.441 0.0 881
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01181 K13126 - nnu:104606838 1109.75