Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01178 ATGGAGGCGGAGTGTTGTTCGAGTGCAGAGACGCGTAGGGGGACGCAGAGAGACAAACCCTATAGGGGTATAAGGATGAGGAAGTGGGGGAAGTGGGTGGCGGAGATTAGAGAACCTAACAAGAGGTCTAGAATCTGGCTTGGTTCTTACTCCACACCCGTGGCTGCTGCACGAGCCTACGACACCGCTGTTTTCTATTTAAGAGGTCGGTCGGCCCGGCTCAACTTCCCGGAATTTGTTGTAGAAGAAGACGAGCTCCATGACATGTCTGCGGCGTCGATACGAAAGAAAGCTACGGAGGTTGGAGCCAGAGTGGACGCCCTTGAAACTGGCCACCTCGCTTCCGGACATAACTCTTGCCGGCCTACTAAGAATCCCGACTTGAACGAGAAACCCAAGCTTGAAAGCTCAGATGAGGATTGA 423 0.5343 MEAECCSSAETRRGTQRDKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGRSARLNFPEFVVEEDELHDMSAASIRKKATEVGARVDALETGHLASGHNSCRPTKNPDLNEKPKLESSDED* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01178 140 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Eupl03g01178 140 PRINTS Ethylene responsive element binding protein signature 59 79 IPR001471 GO:0003700|GO:0006355
Eupl03g01178 140 Pfam AP2 domain 21 69 IPR001471 GO:0003700|GO:0006355
Eupl03g01178 140 Gene3D AP2/ERF domain 20 79 IPR036955 GO:0003700|GO:0006355
Eupl03g01178 140 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Eupl03g01178 140 MobiDBLite consensus disorder prediction 109 140 - -
Eupl03g01178 140 CDD AP2 21 78 IPR001471 GO:0003700|GO:0006355
Eupl03g01178 140 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Eupl03g01178 140 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 7 139 - -
Eupl03g01178 140 MobiDBLite consensus disorder prediction 124 140 - -
Eupl03g01178 140 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Eupl03g01178 140 FunFam Ethylene-responsive transcription factor 2 19 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g01178 Eupl-Chr3 36285677 36287119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01178 1 131 AP2-EREBP Transcription Factor Family AT5G67190 62.687 6.34e-51 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Eupl03g01178 AP2 1.8e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01178 K09286 - ming:122075723 226.098