Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g01177 ATGAATCCCCTCTGCAACCCAACTGACGTTCTTCCGTCCAAACCCCCTCCGGTGGTTTCTCCTTTTTTTCTTCACAGACCCAAACAAATAAGCCTCAGACTCAACACCTTCATCAACCTCAAGAGGCCCCTCACCCTAATCGACGCAACCTCGCAGCTCAACCGGCCCGAATGGCGAATCGCCTCCAGCGCGGCTGACCACGCGGCCTCGGCCGCAATGGCGGAGGTGGACATGGCGAGAAACAGCGAAGGAATCTGGACTGCAAAGCAGAAGAAAGTGGTGGTTCTGTGGGACCTCGACAACAAACCCCCTCGTGGCCCTCCTTACCAGGCTGCCATGGCACTAAGACAGTTAGCCCAGCGCTTCGGAGACGTGGTCGACATCTCCGCATACGCCAACCGCCACGCCTTCATCCACCTCCCTCAGTGGGTCCTCGAAGAGCGCCGGGAGCGCCGCCGCAATGACGTCCTCGAGCGCAAGGGCATCTCCACCCCGCCCGAGCCCTACGTCTGCGGCGTCTGCGGCCGCAAGTGCCGTACCAACCTCGACCTCAAGAAGCACTTCAAACAGCTCCACGAGCGCGAGCGCCAGAAGAAGCTCAACCGAATGCGGTCCCTCAAAGGCAAGAAACGTCAGCGTTACAAGGAGCGTTTCATATCTGGGAATCATAAGTACGAGGAGGCAGCTAGGTCTTTGATCGCTCCCAAGGTTGGGTACGGTCTTGCGTCGGAACTTCGGCGTGCTGGGGTTTTCGTGAAGACGGTGGAGGATAAACCGCAGGCGGCAGATTGGGCACTTAAGCGGCAGATGCAGCATTCCATGAGTCGTGGGATTGATTGGCTGCTCTTGGTTTCGGATGATTCGGATTTTTCCGATATGCTCAGGAGGACCAGGGATTCTAATTTGCGAACGGTTGTTGTAGGTGATTGGCATAGGGCATTGGGCCGCCATGCCGATTTATGGGTTCCGTGGATTGGGGTCGAGAATGGGGAGGTGGGAGAGGAGGAATTGTTGTCTGGGTGGAGGAGGAGAGATGAATTCTTGGATGAGGAGGATGATGGTTTGTTTTCAAGCACACATTTTGATGGAGAAAGTGATGATGAGAGTGATTTGGATCGGGTTGTGGATGAGCTTGTAGTTACGAACTCTGGATTTAATGGTATCAGGATTTCAGAATTTTCAGAGGGGGAGGAGGATGAGAGATGGGTGAGCGATGAACTTGACAATGAGGGTACTCATGGTCGTATTGGAAACCTTGGCCCGCCTCTTTCTGAGAAGGATTTGTTTTGGGAGAGTGAGGAAGACGAAAGAGAAGAGGAAGATGGGTTCTTTTGA 1335 0.5438 MNPLCNPTDVLPSKPPPVVSPFFLHRPKQISLRLNTFINLKRPLTLIDATSQLNRPEWRIASSAADHAASAAMAEVDMARNSEGIWTAKQKKVVVLWDLDNKPPRGPPYQAAMALRQLAQRFGDVVDISAYANRHAFIHLPQWVLEERRERRRNDVLERKGISTPPEPYVCGVCGRKCRTNLDLKKHFKQLHERERQKKLNRMRSLKGKKRQRYKERFISGNHKYEEAARSLIAPKVGYGLASELRRAGVFVKTVEDKPQAADWALKRQMQHSMSRGIDWLLLVSDDSDFSDMLRRTRDSNLRTVVVGDWHRALGRHADLWVPWIGVENGEVGEEELLSGWRRRDEFLDEEDDGLFSSTHFDGESDDESDLDRVVDELVVTNSGFNGIRISEFSEGEEDERWVSDELDNEGTHGRIGNLGPPLSEKDLFWESEEDEREEEDGFF* 445
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g01177 444 MobiDBLite consensus disorder prediction 429 444 - -
Eupl03g01177 444 CDD PIN_LabA-like 179 309 - -
Eupl03g01177 444 ProSitePatterns Zinc finger C2H2 type domain signature. 171 192 IPR013087 -
Eupl03g01177 444 ProSiteProfiles Zinc finger C2H2 type domain profile. 169 197 IPR013087 -
Eupl03g01177 444 Gene3D - 85 324 - -
Eupl03g01177 444 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 55 400 - -
Eupl03g01177 444 Coils Coil 189 209 - -
Eupl03g01177 444 MobiDBLite consensus disorder prediction 408 444 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Eupl03g01177 Eupl-Chr3 36266158 36268264 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g01177 1 408 C2H2 Transcription Factor Family AT5G52010 60.097 5.45e-167 473
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl03g01177 None None None
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g01177 - - ming:122076639 535.798